BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-06-A7TK-01A CLSPN GBM chr1 35743507 35743509 TCC - p.E997del inframe_deletion PASS 0.227272727
TCGA-06-A7TK-01A ERICH3 GBM chr1 74571759 74571759 G A p.D1317D synonymous_variant PASS 0.228915663
TCGA-06-A7TK-01A SLC6A17 GBM chr1 110198147 110198147 G A p.T629T synonymous_variant PASS 0.37037037
TCGA-06-A7TK-01A CAD GBM chr2 27225710 27225710 G A p.Q542Q synonymous_variant PASS 0.390070922
TCGA-06-A7TK-01A SMYD1 GBM chr2 88067922 88067922 G A p.G20S missense_variant PASS 0.325757576
TCGA-06-A7TK-01A SCTR GBM chr2 119478870 119478870 G A p.P81L missense_variant PASS 0.448275862
TCGA-06-A7TK-01A POTEE GBM chr2 131226916 131226916 G C p.D302H missense_variant PASS 0.290322581
TCGA-06-A7TK-01A HNMT GBM chr2 137964504 137964504 A C p.M5L missense_variant PASS 0.317073171
TCGA-06-A7TK-01A SESTD1 GBM chr2 179112837 179112837 C A p.Q616H missense_variant PASS 0.388888889
TCGA-06-A7TK-01A GRM7 GBM chr3 7461685 7461685 G A p.R493H missense_variant PASS 0.378947368