BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-06-A7TK-01A |
CLSPN |
GBM |
chr1 |
35743507 |
35743509 |
TCC |
- |
p.E997del |
inframe_deletion |
PASS |
0.227272727 |
| TCGA-06-A7TK-01A |
ERICH3 |
GBM |
chr1 |
74571759 |
74571759 |
G |
A |
p.D1317D |
synonymous_variant |
PASS |
0.228915663 |
| TCGA-06-A7TK-01A |
SLC6A17 |
GBM |
chr1 |
110198147 |
110198147 |
G |
A |
p.T629T |
synonymous_variant |
PASS |
0.37037037 |
| TCGA-06-A7TK-01A |
CAD |
GBM |
chr2 |
27225710 |
27225710 |
G |
A |
p.Q542Q |
synonymous_variant |
PASS |
0.390070922 |
| TCGA-06-A7TK-01A |
SMYD1 |
GBM |
chr2 |
88067922 |
88067922 |
G |
A |
p.G20S |
missense_variant |
PASS |
0.325757576 |
| TCGA-06-A7TK-01A |
SCTR |
GBM |
chr2 |
119478870 |
119478870 |
G |
A |
p.P81L |
missense_variant |
PASS |
0.448275862 |
| TCGA-06-A7TK-01A |
POTEE |
GBM |
chr2 |
131226916 |
131226916 |
G |
C |
p.D302H |
missense_variant |
PASS |
0.290322581 |
| TCGA-06-A7TK-01A |
HNMT |
GBM |
chr2 |
137964504 |
137964504 |
A |
C |
p.M5L |
missense_variant |
PASS |
0.317073171 |
| TCGA-06-A7TK-01A |
SESTD1 |
GBM |
chr2 |
179112837 |
179112837 |
C |
A |
p.Q616H |
missense_variant |
PASS |
0.388888889 |
| TCGA-06-A7TK-01A |
GRM7 |
GBM |
chr3 |
7461685 |
7461685 |
G |
A |
p.R493H |
missense_variant |
PASS |
0.378947368 |