BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-F6-A8O4-01A |
DIRAS3 |
LGG |
chr1 |
68046990 |
68046990 |
C |
T |
p.R103H |
missense_variant |
PASS |
0.381578947 |
| TCGA-F6-A8O4-01A |
GLMP |
LGG |
chr1 |
156293044 |
156293044 |
T |
C |
p.*407* |
stop_retained_variant |
PASS |
0.4 |
| TCGA-F6-A8O4-01A |
STYXL2 |
LGG |
chr1 |
167128426 |
167128426 |
G |
A |
p.G1099R |
missense_variant |
PASS |
0.222222222 |
| TCGA-F6-A8O4-01A |
TRIM58 |
LGG |
chr1 |
247864730 |
247864730 |
G |
A |
p.R181H |
missense_variant |
PASS |
0.451612903 |
| TCGA-F6-A8O4-01A |
IDH1 |
LGG |
chr2 |
208248388 |
208248388 |
C |
T |
p.R132H |
missense_variant |
PASS |
0.292307692 |
| TCGA-F6-A8O4-01A |
CXCR1 |
LGG |
chr2 |
218164178 |
218164178 |
T |
C |
p.N345S |
missense_variant |
PASS |
0.390243902 |
| TCGA-F6-A8O4-01A |
SCN11A |
LGG |
chr3 |
38846983 |
38846983 |
C |
T |
p.G1696D |
missense_variant |
PASS |
0.376068376 |
| TCGA-F6-A8O4-01A |
IQCG |
LGG |
chr3 |
197943801 |
197943801 |
C |
T |
p.E87K |
missense_variant |
PASS |
0.37037037 |
| TCGA-F6-A8O4-01A |
APC |
LGG |
chr5 |
112840559 |
112840559 |
A |
C |
p.T1655T |
synonymous_variant |
PASS |
0.509090909 |
| TCGA-F6-A8O4-01A |
CNOT6 |
LGG |
chr5 |
180571424 |
180571424 |
G |
A |
p.D485N |
missense_variant |
PASS |
0.389830508 |
