BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-HT-A74J-01A |
USP48 |
LGG |
chr1 |
21690014 |
21690014 |
C |
T |
p.G990D |
missense_variant |
PASS |
0.458333333 |
| TCGA-HT-A74J-01A |
MIA3 |
LGG |
chr1 |
222654458 |
222654458 |
T |
C |
p.S1483P |
missense_variant |
PASS |
0.319148936 |
| TCGA-HT-A74J-01A |
COA6 |
LGG |
chr1 |
234373752 |
234373752 |
C |
T |
p.R12C |
missense_variant |
PASS |
0.393442623 |
| TCGA-HT-A74J-01A |
ZDBF2 |
LGG |
chr2 |
206309153 |
206309153 |
A |
G |
p.D1542G |
missense_variant |
PASS |
0.315789474 |
| TCGA-HT-A74J-01A |
IDH1 |
LGG |
chr2 |
208248388 |
208248388 |
C |
T |
p.R132H |
missense_variant |
PASS |
0.518518519 |
| TCGA-HT-A74J-01A |
CTNNB1 |
LGG |
chr3 |
41233339 |
41233339 |
A |
G |
p.X361_splice |
splice_acceptor_variant |
PASS |
0.131147541 |
| TCGA-HT-A74J-01A |
MAP4 |
LGG |
chr3 |
47916103 |
47916103 |
T |
C |
p.D575G |
missense_variant |
PASS |
0.376344086 |
| TCGA-HT-A74J-01A |
PDLIM3 |
LGG |
chr4 |
185523412 |
185523412 |
C |
T |
p.E94K |
missense_variant |
PASS |
0.307692308 |
| TCGA-HT-A74J-01A |
PDE10A |
LGG |
chr6 |
165450303 |
165450303 |
C |
G |
p.R85R |
synonymous_variant |
PASS |
0.401315789 |
| TCGA-HT-A74J-01A |
TRIM56 |
LGG |
chr7 |
101088837 |
101088837 |
C |
T |
p.R509W |
missense_variant |
PASS |
0.326530612 |
