BrainBase a curated knowledgebase for brain diseases

  • Home
  • Variation
    • Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
    TCGA-WY-A858-01A LGALS8 LGG chr1 236537505 236537505 G A p.P18P synonymous_variant PASS 0.432835821
    TCGA-WY-A858-01A TTN LGG chr2 178554682 178554682 C G p.W27914C missense_variant PASS 0.264957265
    TCGA-WY-A858-01A IDH1 LGG chr2 208248388 208248388 C T p.R132H missense_variant PASS 0.2875
    TCGA-WY-A858-01A KIF9 LGG chr3 47265830 47265830 G C p.L272L synonymous_variant PASS 0.327586207
    TCGA-WY-A858-01A PTPN23 LGG chr3 47409253 47409253 G A p.R578H missense_variant PASS 0.307692308
    TCGA-WY-A858-01A ALCAM LGG chr3 105547212 105547213 TA - p.Y390Cfs*10 frameshift_variant PASS 0.230769231
    TCGA-WY-A858-01A HHLA2 LGG chr3 108353753 108353756 ACAA - p.N132Kfs*4 frameshift_variant PASS 0.205882353
    TCGA-WY-A858-01A SLC9C1 LGG chr3 112264291 112264291 C T p.G311R missense_variant PASS 0.25
    TCGA-WY-A858-01A SNX25 LGG chr4 185346621 185346621 T C p.S594P missense_variant PASS 0.123287671
    TCGA-WY-A858-01A FOXC1 LGG chr6 1612185 1612185 A - 3_prime_UTR_variant PASS 0.222222222