BrainBase a curated knowledgebase for brain diseases

Brain-region-specific genes are defined as those genes that are maximally expressed in each brain regions with τ > 0.9. As a consequence, 546 brain-region-specific genes of 12 brain regions are identified.

Brain Region:	All Cerebellum (177) Cerebellar Hemisphere (140) Spinal cord (cervical c-1) (139) Hypothalamus (34) Nucleus accumbens (basal ganglia) (23) Substantia nigra (14) Frontal Cortex (BA9) (6) Cortex (5) Hippocampus (4) Putamen (basal ganglia) (2) Amygdala (1) Caudate (basal ganglia) (1)
Type:	All mRNA (282) lncRNA (160) pseudogene (59) snRNA (10) miRNA (7) snoRNA (3)

Search:

Gene Symbol	Type	τ-value	Max Tissue	Max Value (TPM)	Expression Breadth
ABCA6	mRNA	0.94561553	Spinal cord (cervical c-1)	11.44	7
AC000078.5	pseudogene	0.905044213	Cerebellum	11.78	5
AC002472.11	lncRNA	0.908148705	Cerebellum	1.828	2
AC004448.5	lncRNA	0.914371931	Cerebellum	19.01	4
AC004593.3	lncRNA	0.924650576	Cerebellum	1.388	2
AC005262.3	lncRNA	0.933341266	Cerebellum	2.101	2
AC005391.2	lncRNA	0.926757246	Cerebellum	2.3	2
AC005606.14	lncRNA	0.919403893	Cerebellum	1.37	2
AC007106.1	lncRNA	0.973842074	Spinal cord (cervical c-1)	21.5	3
AC007386.3	pseudogene	0.905947779	Cerebellum	2.716	2

Showing 1 to 10 of 546 entries