BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-02-2466-01A EPHB2 GBM chr1 22913494 22913494 G A p.G962D missense_variant PASS 0.269230769
TCGA-02-2466-01A SYTL1 GBM chr1 27350849 27350850 - C p.R355Pfs*14 frameshift_variant PASS 0.293103448
TCGA-02-2466-01A TMEM53 GBM chr1 44655133 44655133 C T p.R87H missense_variant PASS 0.447368421
TCGA-02-2466-01A TAL1 GBM chr1 47219817 47219817 C T p.S300N missense_variant PASS 0.476190476
TCGA-02-2466-01A DAB1 GBM chr1 57026017 57026017 C A p.G283G synonymous_variant PASS 0.554726368
TCGA-02-2466-01A C1orf141 GBM chr1 67093367 67093367 G C p.Q281E missense_variant PASS 0.455223881
TCGA-02-2466-01A COL24A1 GBM chr1 86022555 86022555 C T p.G729R missense_variant PASS 0.157142857
TCGA-02-2466-01A CLCA1 GBM chr1 86491326 86491326 G A p.G473G synonymous_variant PASS 0.494117647
TCGA-02-2466-01A ITGA10 GBM chr1 145902284 145902284 C A p.E371* stop_gained PASS 0.136094675
TCGA-02-2466-01A FGFR1 GBM chr1 152307841 152307841 C T p.G2349R missense_variant PASS 0.511346445