BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-06-0154-01A |
CLCNKA |
GBM |
chr1 |
16028798 |
16028798 |
G |
A |
p.A336T |
missense_variant |
PASS |
0.215873016 |
TCGA-06-0154-01A |
LRRC7 |
GBM |
chr1 |
70038288 |
70038288 |
A |
G |
p.T784A |
missense_variant |
PASS |
0.271604938 |
TCGA-06-0154-01A |
MCOLN3 |
GBM |
chr1 |
85034227 |
85034227 |
C |
T |
p.V141I |
missense_variant |
PASS |
0.354166667 |
TCGA-06-0154-01A |
SYT6 |
GBM |
chr1 |
114093775 |
114093775 |
C |
T |
|
3_prime_UTR_variant |
PASS |
0.276595745 |
TCGA-06-0154-01A |
MAB21L3 |
GBM |
chr1 |
116133204 |
116133204 |
C |
T |
p.R310C |
missense_variant |
PASS |
0.292682927 |
TCGA-06-0154-01A |
FGFR1 |
GBM |
chr1 |
152310607 |
152310607 |
C |
T |
p.A1427T |
missense_variant |
PASS |
0.34025974 |
TCGA-06-0154-01A |
F5 |
GBM |
chr1 |
169541325 |
169541325 |
C |
G |
p.Q1255H |
missense_variant |
PASS |
0.30529595 |
TCGA-06-0154-01A |
RYR2 |
GBM |
chr1 |
237760981 |
237760981 |
G |
A |
p.R3810Q |
missense_variant |
PASS |
0.444444444 |
TCGA-06-0154-01A |
POTEE |
GBM |
chr2 |
131263775 |
131263775 |
G |
A |
p.G774S |
missense_variant |
PASS |
0.220472441 |
TCGA-06-0154-01A |
SCN7A |
GBM |
chr2 |
166470681 |
166470681 |
C |
A |
p.D200Y |
missense_variant |
PASS |
0.242424242 |