BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-06-0155-01B CLCNKB GBM chr1 16052256 16052256 C T p.F489F synonymous_variant PASS 0.23
TCGA-06-0155-01B AP4B1 GBM chr1 113895906 113895906 G A p.P548L missense_variant PASS 0.390909091
TCGA-06-0155-01B ANGPTL1 GBM chr1 178865236 178865236 A G p.S181P missense_variant PASS 0.338345865
TCGA-06-0155-01B OBSCN GBM chr1 228243444 228243444 G T p.R1064L missense_variant PASS 0.37254902
TCGA-06-0155-01B CHRM3 GBM chr1 239908935 239908935 C T p.A495V missense_variant PASS 0.395
TCGA-06-0155-01B HNRNPU GBM chr1 244858746 244858748 CAT - p.D404del inframe_deletion PASS 0.234042553
TCGA-06-0155-01B CAPN13 GBM chr2 30743503 30743503 C T p.R442H missense_variant PASS 0.40192926
TCGA-06-0155-01B DYSF GBM chr2 71643981 71643981 A C p.D1476A missense_variant PASS 0.352941176
TCGA-06-0155-01B NIFK GBM chr2 121730805 121730805 A G intron_variant PASS 0.446808511
TCGA-06-0155-01B SCN9A GBM chr2 166228843 166228843 T A p.N1352Y missense_variant PASS 0.360759494