BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-06-0237-01A |
AGRN |
GBM |
chr1 |
1043572 |
1043572 |
C |
T |
p.C546C |
synonymous_variant |
PASS |
0.431506849 |
TCGA-06-0237-01A |
USH2A |
GBM |
chr1 |
215759735 |
215759735 |
C |
T |
p.R3719H |
missense_variant |
PASS |
0.428571429 |
TCGA-06-0237-01A |
GJC2 |
GBM |
chr1 |
228159129 |
228159129 |
G |
A |
|
3_prime_UTR_variant |
PASS |
0.40625 |
TCGA-06-0237-01A |
OBSCN |
GBM |
chr1 |
228306988 |
228306988 |
C |
T |
p.A4005V |
missense_variant |
PASS |
0.463414634 |
TCGA-06-0237-01A |
RYR2 |
GBM |
chr1 |
237649934 |
237649934 |
G |
A |
p.V2524I |
missense_variant |
PASS |
0.328413284 |
TCGA-06-0237-01A |
FANCD2 |
GBM |
chr3 |
10042588 |
10042588 |
G |
A |
p.S271S |
synonymous_variant |
PASS |
0.411149826 |
TCGA-06-0237-01A |
WDR6 |
GBM |
chr3 |
49015420 |
49015420 |
G |
A |
|
3_prime_UTR_variant |
PASS |
0.441860465 |
TCGA-06-0237-01A |
SLC9C1 |
GBM |
chr3 |
112286762 |
112286763 |
- |
A |
p.S11Qfs*3 |
frameshift_variant |
PASS |
0.339285714 |
TCGA-06-0237-01A |
PLS1 |
GBM |
chr3 |
142686306 |
142686306 |
T |
G |
p.L304R |
missense_variant |
PASS |
0.392857143 |
TCGA-06-0237-01A |
CRYGS |
GBM |
chr3 |
186538806 |
186538806 |
G |
T |
p.P143T |
missense_variant |
PASS |
0.411764706 |