BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-12-0691-01A |
IL12RB2 |
GBM |
chr1 |
67329710 |
67329710 |
A |
G |
p.N263S |
missense_variant |
PASS |
0.339055794 |
TCGA-12-0691-01A |
CHRNB2 |
GBM |
chr1 |
154571760 |
154571760 |
G |
A |
p.V313I |
missense_variant |
PASS |
0.428571429 |
TCGA-12-0691-01A |
UBQLN4 |
GBM |
chr1 |
156042792 |
156042792 |
G |
T |
p.N416K |
missense_variant |
PASS |
0.413793103 |
TCGA-12-0691-01A |
FCRL3 |
GBM |
chr1 |
157698601 |
157698601 |
G |
A |
p.L27L |
synonymous_variant |
PASS |
0.380208333 |
TCGA-12-0691-01A |
STYXL2 |
GBM |
chr1 |
167126248 |
167126248 |
C |
T |
p.R373C |
missense_variant |
PASS |
0.375 |
TCGA-12-0691-01A |
SELE |
GBM |
chr1 |
169732953 |
169732953 |
G |
A |
p.T28M |
missense_variant |
PASS |
0.39869281 |
TCGA-12-0691-01A |
CFH |
GBM |
chr1 |
196652095 |
196652095 |
T |
C |
|
5_prime_UTR_variant |
PASS |
0.416666667 |
TCGA-12-0691-01A |
GOLGA4 |
GBM |
chr3 |
37324689 |
37324689 |
G |
C |
p.E935Q |
missense_variant |
PASS |
0.352657005 |
TCGA-12-0691-01A |
COL8A1 |
GBM |
chr3 |
99795944 |
99795944 |
C |
T |
p.N681N |
synonymous_variant |
PASS |
0.131578947 |
TCGA-12-0691-01A |
PPEF2 |
GBM |
chr4 |
75860859 |
75860859 |
G |
A |
p.I690I |
synonymous_variant |
PASS |
0.421777222 |