BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-E1-A7YQ-01A |
IGKV5-2 |
LGG |
chr2 |
88897746 |
88897746 |
G |
A |
p.A103T |
missense_variant |
PASS |
0.223880597 |
TCGA-E1-A7YQ-01A |
BUB1 |
LGG |
chr2 |
110657631 |
110657631 |
A |
T |
p.S511T |
missense_variant |
PASS |
0.186046512 |
TCGA-E1-A7YQ-01A |
PBRM1 |
LGG |
chr3 |
52576650 |
52576650 |
G |
- |
p.I1195Sfs*23 |
frameshift_variant |
PASS |
0.484375 |
TCGA-E1-A7YQ-01A |
HEG1 |
LGG |
chr3 |
125029377 |
125029377 |
A |
G |
p.M143T |
missense_variant |
PASS |
0.509433962 |
TCGA-E1-A7YQ-01A |
SOWAHB |
LGG |
chr4 |
76896664 |
76896664 |
C |
G |
p.D396H |
missense_variant |
PASS |
0.339622642 |
TCGA-E1-A7YQ-01A |
EGFR |
LGG |
chr7 |
55173057 |
55173057 |
G |
A |
p.G665D |
missense_variant |
PASS |
0.822894168 |
TCGA-E1-A7YQ-01A |
MUC17 |
LGG |
chr7 |
101042217 |
101042217 |
G |
C |
p.V3601L |
missense_variant |
PASS |
0.119760479 |
TCGA-E1-A7YQ-01A |
AOPEP |
LGG |
chr9 |
94773113 |
94773115 |
TTT |
- |
p.F304del |
inframe_deletion |
PASS |
0.473684211 |
TCGA-E1-A7YQ-01A |
AOPEP |
LGG |
chr9 |
94773117 |
94773117 |
G |
C |
p.V305L |
missense_variant |
PASS |
0.511450382 |
TCGA-E1-A7YQ-01A |
VTI1A |
LGG |
chr10 |
112447408 |
112447408 |
T |
C |
p.F12S |
missense_variant |
PASS |
0.52173913 |