BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-HT-8110-01A |
IQGAP3 |
LGG |
chr1 |
156530189 |
156530189 |
G |
C |
p.V1440V |
synonymous_variant |
PASS |
0.352941176 |
| TCGA-HT-8110-01A |
RXRG |
LGG |
chr1 |
165419922 |
165419922 |
G |
A |
p.S130S |
synonymous_variant |
PASS |
0.234042553 |
| TCGA-HT-8110-01A |
H3-3A |
LGG |
chr1 |
226064358 |
226064358 |
C |
T |
p.R3C |
missense_variant |
PASS |
0.4 |
| TCGA-HT-8110-01A |
OBSCN |
LGG |
chr1 |
228273895 |
228273895 |
G |
A |
p.D1755N |
missense_variant |
PASS |
0.470588235 |
| TCGA-HT-8110-01A |
OR2T27 |
LGG |
chr1 |
248650713 |
248650713 |
G |
A |
p.P58S |
missense_variant |
PASS |
0.142857143 |
| TCGA-HT-8110-01A |
SRBD1 |
LGG |
chr2 |
45393036 |
45393036 |
C |
T |
p.E869E |
synonymous_variant |
PASS |
0.380952381 |
| TCGA-HT-8110-01A |
TTN |
LGG |
chr2 |
178579130 |
178579130 |
C |
G |
p.G20993R |
missense_variant |
PASS |
0.244444444 |
| TCGA-HT-8110-01A |
EMC3 |
LGG |
chr3 |
9963974 |
9963976 |
TCC |
- |
|
3_prime_UTR_variant |
PASS |
0.133333333 |
| TCGA-HT-8110-01A |
IMPDH2 |
LGG |
chr3 |
49027823 |
49027823 |
A |
T |
p.C140S |
missense_variant |
PASS |
0.263157895 |
| TCGA-HT-8110-01A |
FAIM |
LGG |
chr3 |
138622375 |
138622375 |
G |
A |
p.W100* |
stop_gained |
PASS |
0.394736842 |
