BrainBase
a curated knowledgebase for brain diseases
| Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
| TCGA-OX-A56R-01A |
CASP9 |
GBM |
chr1 |
15491364 |
15491366 |
AAT |
- |
|
downstream_gene_variant |
PASS |
0.827586207 |
| TCGA-OX-A56R-01A |
PTGFRN |
GBM |
chr1 |
116941953 |
116941953 |
G |
A |
p.R96R |
synonymous_variant |
PASS |
0.370967742 |
| TCGA-OX-A56R-01A |
FLAD1 |
GBM |
chr1 |
154983649 |
154983651 |
AGA |
- |
|
5_prime_UTR_variant |
PASS |
0.384615385 |
| TCGA-OX-A56R-01A |
PROX1 |
GBM |
chr1 |
214011673 |
214011673 |
C |
T |
p.Y662Y |
synonymous_variant |
PASS |
0.505154639 |
| TCGA-OX-A56R-01A |
PTPN14 |
GBM |
chr1 |
214483247 |
214483250 |
ACAA |
- |
|
intron_variant |
PASS |
0.203125 |
| TCGA-OX-A56R-01A |
OR14C36 |
GBM |
chr1 |
248349081 |
248349082 |
- |
T |
p.V106Cfs*14 |
frameshift_variant |
PASS |
0.486486486 |
| TCGA-OX-A56R-01A |
ZEB2 |
GBM |
chr2 |
144517332 |
144517332 |
C |
G |
p.A7P |
missense_variant |
PASS |
0.359550562 |
| TCGA-OX-A56R-01A |
FAM117B |
GBM |
chr2 |
202695970 |
202695970 |
G |
A |
p.G231R |
missense_variant |
PASS |
0.489361702 |
| TCGA-OX-A56R-01A |
GRM7 |
GBM |
chr3 |
7146459 |
7146459 |
A |
G |
p.Q176R |
missense_variant |
PASS |
0.414893617 |
| TCGA-OX-A56R-01A |
SGO1 |
GBM |
chr3 |
20174653 |
20174654 |
TC |
- |
p.E293Rfs*6 |
frameshift_variant |
PASS |
0.25 |
