BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-VM-A8CD-01A |
PADI3 |
LGG |
chr1 |
17283115 |
17283115 |
G |
A |
|
3_prime_UTR_variant |
PASS |
0.43902439 |
TCGA-VM-A8CD-01A |
CFH |
LGG |
chr1 |
196685138 |
196685138 |
G |
A |
p.E289K |
missense_variant |
PASS |
0.373493976 |
TCGA-VM-A8CD-01A |
HOXD4 |
LGG |
chr2 |
176152941 |
176152941 |
A |
G |
p.*256Wext*81 |
stop_lost |
PASS |
0.328125 |
TCGA-VM-A8CD-01A |
PLXNB1 |
LGG |
chr3 |
48412837 |
48412837 |
G |
A |
p.R1587W |
missense_variant |
PASS |
0.369565217 |
TCGA-VM-A8CD-01A |
POLQ |
LGG |
chr3 |
121436152 |
121436152 |
G |
T |
p.R2505R |
synonymous_variant |
PASS |
0.246753247 |
TCGA-VM-A8CD-01A |
ANK2 |
LGG |
chr4 |
113353186 |
113353186 |
C |
T |
p.T1523I |
missense_variant |
PASS |
0.363636364 |
TCGA-VM-A8CD-01A |
MCTP1 |
LGG |
chr5 |
94708574 |
94708574 |
A |
G |
p.Y956H |
missense_variant |
PASS |
0.282608696 |
TCGA-VM-A8CD-01A |
NCR3 |
LGG |
chr6 |
31589142 |
31589142 |
C |
T |
p.P177P |
synonymous_variant |
PASS |
0.333333333 |
TCGA-VM-A8CD-01A |
EGFR |
LGG |
chr7 |
55165304 |
55165304 |
G |
T |
p.A583S |
missense_variant |
PASS |
0.169014085 |
TCGA-VM-A8CD-01A |
EGFR |
LGG |
chr7 |
55165350 |
55165350 |
G |
T |
p.G598V |
missense_variant |
PASS |
0.227272727 |