SoyOmics is a panoramic-multidimensional omics resource of soybean, the world's most important legume crop, which provides multi-omics information for geneticists and breeders and is designed for "Breeding 4.0".
Genome
27 de novo assembly genomes for wild and cultivated soybeans
Variome
Variome over ~3,000 soybean germplasms, including SNPs and small INDELs
Transcriptome
Transcriptome for bulk and single cell RNA-seq from different organ-stage samples
Phenome
Phenotype of 115 traits of soybean, from several years and locations
Homology
Gene homology families among 27 sample pan-genome
Synteny
chromosome and gene synteny overview of the 27 sample pan-genome
- 7 snRNA-seq datasets were added (2024-08-01)
- 5 stereo-seq datasets were added (2024-08-01)
- 314 tissues transcriptome data was added (2024-08-01)
- Blast tool added (2023-04-20)
- SeqFetch tool added (2023-03-01)
- HapSnap tool added (2022-12-16)
- Transcriptome search function updated (2022-12-11)
- Download page added (2022-11-20)
- ExpPattern added (2022-10-17)
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SoyOmics: A deeply integrated database on soybean multi-omics. Molecular plant. 2023
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GenoBaits Soy40K a highly flexible and low-cost SNP array for soybean studies. Science China Life Sciences. 2022
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Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
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Update soybean Zhonghuang 13 genome to a golden reference. Science China. Life sciences. 2019.
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De novo assembly of a Chinese soybean genome. Science China. Life sciences. 2018.
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DNA methylation footprints during soybean domestication and improvement. Genome Biology. 2018.
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Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean. Genome Biology. 2017.
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Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nature Biotechnology. 2015.
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Global Dissection of Alternative Splicing in Paleopolyploid Soybean. Plant Cell. 2014
SoyOmics is free for academic use only. For any commercial use, please contact us for commercial licensing terms.