In order to comprehensively understand the transcriptome dynamics of soybeans, we analyzed soybean transcriptome data from three data types: Bulk RNA-seq, Single cell RNA-seq and Stereo-seq.
The Bulk RNA-seq data consists of 28 Tissues Transcriptome dataset and 314 Tissues / Stages Transcriptome dataset.
The Single cell RNA-seq includes 5 Stereo-seq RNA-seq datasets and 7 single-cell datasets.
The VC Trans-atlas is an integrated transcriptome atlas of soybean in Vegetative Cotyledon (VC) stage. Including 12 bulk RNA-seq tissues, 5 Stereo-seq RNA-seq datasets and 7 single-cell datasets.
Bulk RNA-seq Single cell RNA-seq VC Trans-atlas
28 Tissues Transcriptome
View detail

Transcriptome of ZH13/Wm82 in ~28 tissues and their homologous gene from pan-genome in 9 tissue.

314 Tissues Transcriptome
View detail

Transcriptome of ZH13 in 314 samples. Sampling covers 14 organs throughout the life cycle of soybean.

5 Stereo-seq Datasets
View detail

SpaTial Enhanced REsolution Omics-sequencing (Stereo-seq) for root, shoot apical meristem, stem and folded leaf in vegetative cotyledon (VC) stage, for nodule collected 5 days after inoculation with Rhizobium strain USDA-110 at the same stage.
 

7 snRNA-seq Datasets
View detail

Single-nucleus RNA sequencing (snRNA-seq) for the same tissues in Stereo-seq. In addition, the shoot apical meristem, stem and folded leaf were integrated analyzed. The root, nodule and another nodule samples collected 3 days after inoculation with Rhizobium strain USDA-110 were integrated analyzed.

VC Trans-Atlas
View detail

The VC Trans-Atlas is an integrated transcriptome atlas for five soybean organs at Vegetative cotyledon (VC) stage.
The gene expressions at whole organ, single cell and spatial level were displayed for root, nodule, shoot apical, stem and leaf.