ncRNA_loc Web Service for identifying RNA-associated subcellular localizations
Introduction
A web servicer for identifying RNA-associated subcellular localizations. We extract multi-label classification datasets about RNA-associated subcellular localizations on four various of RNAs, and then construct subcellular localization datasets on four RNA categories. In order to study Homo sapiens, we further establish human RNA subcellular localization datasets. Furthermore, we utilize different nucleotide property composition models to extract effective features to adequately represent the important information of nucleotide sequences. Moreover, we fuse the multivariate information through multiple kernel learning based on Hilbert-Schmidt independence criterion. The optimal combined kernel can be put into an integration support vector machine model for identifying multi-label RNA subcellular localizations.
Publications
Credits
- Fei Guo fguo@tju.edu.cn Investigator
School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, China
- Yijie DIng wuxi_dyj@163.com Developer
School of Electronic and Information Engineering, Suzhou University of Science and Technology, China
- Hao Wang hzwh6910@163.com Developer
School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, China
- Jijun Tang jtang@cse.sc.edu Contributor
School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, China
- Zou Quan zouquan@nclab.net Contributor
Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, China
Community Ratings
Usability | Efficiency | Reliability | Rated By |
---|---|---|---|
0 user | |||
Sign in to rate |
Accession | BT007129 |
---|---|
Tool Type | Application |
Category | Subcellular localization prediction |
Platforms | Windows |
Technologies | Python3 |
User Interface | Webpage |
Input Data | FASTA |
Latest Release | 1.0 (May 29, 2021) |
Download Count | 853 |
Country/Region | China |
Submitted By | Fei Guo |
2018YFC0910400