CEPICS A comparison and evaluation platform for integration methods in cancer subtyping
Introduction
CEPICS is a comprehensive evaluation and comparison platform for multi-omics data integration methods in cancer subtyping. Given a user-specified maximum number of subtypes, k-max, CEPICS provides (1) cancer subtyping results using up to five built-in state-of-the-art integration methods under the number of subtypes from two to k-max, (2) a report including the evaluation of each user-selected method and comparisons across them using clustering performance metrics and clinical survival analysis, and (3) an overall analysis of subtyping results by different methods representing a robust cancer subtype prediction for samples. Furthermore, users can upload subtyping results of their own methods to compare with the built-in methods.
Publications
Credits
- Ran Duan duanran9013@126.com InvestigatorDeveloper
School of Computer Science and Technology, Xidian University, China
- Lin Gao lgao@mail.xidian.edu.cn Investigator
School of Computer Science and Technology, Xidian University, China
- Han Xu hxu10670@gmail.com DeveloperContributor
School of Computer Science and Technology, Xidian University, China
- Song Kuo uysk@foxmail.com DeveloperContributor
School of Computer Science and Technology, Xidian University, China
Community Ratings
Usability | Efficiency | Reliability | Rated By |
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Accession | BT007143 |
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Tool Type | Application |
Category | Multi-omic data integration |
Platforms | Linux/Unix, MAC OS X, Windows |
Technologies | R |
User Interface | Terminal Command Line |
Latest Release | 1.0.1 (May 31, 2021) |
Download Count | 837 |
Country/Region | China |
Submitted By | Lin Gao |
This work was supported by the National Key R&D Program of China No.2018YFC0910400.