项目编号

PRJCA000437

项目标题

Genomic sequence of Taraxacum kok-saghyz Rodin

涉及领域

Agricultural

数据类型

Whole genome sequencing

物种名称

Taraxacum kok-saghyz

描述信息

As a potential economic crop for NR production and an ideal model plant for studying rubber biosynthesis, elucidation of the TKS genome will be of great value. In this study, we present a first draft genome of T. kok-saghyz assembled using the PacBio and Illumina sequence data. The assembly has a length of 1.29 Gb (N50 = 100.21 kb), containing 46,731 protein-coding genes. We also present a comprehensive analysis of the genome and the transcriptome, providing new insights into the NR biosynthetic pathways and fundamental information to facilitate the isolation, characterization, and application of key genes in developing new NR-producing.

样品范围

Monoisolate

发布日期

2023-04-23

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
34939160	Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum	Science China Life Sciences	10.1007/s11427-021-2033-2	2022

提交者

Tao Lin (tlin@genetics.ac.cn)

提交单位

Institute of Genetics and Development Biology, Chinese Academy of Sciences

提交日期

2017-04-28

项目包含数据信息

资源名称	描述
BioSample (40) show	-
SAMC1192704	Pacbio seq of Taraxacum kok-saghyz
SAMC1192703	Hi-C seq of Taraxacum kok-saghyz
SAMC1192702	Bionano seq of Taraxacum kok-saghyz
SAMC327636	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327635	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327634	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327633	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327632	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327631	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327630	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327629	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327628	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327627	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327626	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327625	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327624	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327623	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327622	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327621	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327620	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327619	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327618	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327617	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327616	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327615	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327614	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327613	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327612	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327611	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327610	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327609	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327608	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327607	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327606	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327605	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327604	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327603	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC327602	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC327601	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC012932	Genomic sequence of Taraxacum kok-saghyz Rodin
GSA (2)	-
CRA010603	Raw sequencing data for genome assembly of Taraxacum kok-saghyz Rodin
CRA003851	Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis