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项目编号 PRJCA000437
项目标题 Genomic sequence of Taraxacum kok-saghyz Rodin
涉及领域 Agricultural
数据类型 Whole genome sequencing
物种名称 Taraxacum kok-saghyz
描述信息 As a potential economic crop for NR production and an ideal model plant for studying rubber biosynthesis, elucidation of the TKS genome will be of great value. In this study, we present a first draft genome of T. kok-saghyz assembled using the PacBio and Illumina sequence data. The assembly has a length of 1.29 Gb (N50 = 100.21 kb), containing 46,731 protein-coding genes. We also present a comprehensive analysis of the genome and the transcriptome, providing new insights into the NR biosynthetic pathways and fundamental information to facilitate the isolation, characterization, and application of key genes in developing new NR-producing.
样品范围 Monoisolate
发布日期 2023-04-23
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
34939160 Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum Science China Life Sciences 10.1007/s11427-021-2033-2 2022
32070270 Phytochemical and comparative transcriptome analyses reveal different regulatory mechanisms in the terpenoid biosynthesis pathways between Matricaria recutita L. and Chamaemelum nobile L . BMC Genomics 10.1186/s12864-020-6579-z 2020
35582615 Genome-wide identification of CBF genes and their responses to cold acclimation in Taraxacum kok-saghyz PeerJ 10.7717/peerj.13429 2022
33809548 Microscopic and Transcriptomic Analysis of Pollination Processes in Self-Incompatible Taraxacum koksaghyz Plants 10.3390/plants10030555 2021
36015381 Genome-Wide Identification and Spatial Expression Analysis of Histone Modification Gene Families in the Rubber Dandelion Taraxacum kok-saghyz Plants 10.3390/plants11162077 2022
36678964 Functional Characterization of TkSRPP Promoter in Response to Hormones and Wounding Stress in Transgenic Tobacco Plants 10.3390/plants12020252 2023
39124151 TkJAZs-TkMYC2-TkSRPP/REF Regulates the Biosynthesis of Natural Rubber in Taraxacum kok-saghyz Plants 10.3390/plants13152034 2024
39409658 Genome-Wide Identification of the Geranylgeranyl Pyrophosphate Synthase (GGPS) Gene Family Associated with Natural Rubber Synthesis in Taraxacum kok-saghyz L. Rodin Plants 10.3390/plants13192788 2024
41225873 TkMYB7 Coordinates Jasmonate and Ethylene Signaling to Regulate Natural Rubber Biosynthesis in Taraxacum kok-saghyz Plants 10.3390/plants14213323 2025
提交者 Tao Lin (tlin@genetics.ac.cn)
提交单位 Institute of Genetics and Development Biology, Chinese Academy of Sciences
提交日期 2017-04-28

项目包含数据信息

资源名称 描述
BioSample (40)  show -
GSA (2) -
CRA010603 Raw sequencing data for genome assembly of Taraxacum kok-saghyz Rodin
CRA003851 Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis