Accession

PRJCA000437

Title

Genomic sequence of Taraxacum kok-saghyz Rodin

Relevance

Agricultural

Data types

Whole genome sequencing

Organisms

Taraxacum kok-saghyz

Description

As a potential economic crop for NR production and an ideal model plant for studying rubber biosynthesis, elucidation of the TKS genome will be of great value. In this study, we present a first draft genome of T. kok-saghyz assembled using the PacBio and Illumina sequence data. The assembly has a length of 1.29 Gb (N50 = 100.21 kb), containing 46,731 protein-coding genes. We also present a comprehensive analysis of the genome and the transcriptome, providing new insights into the NR biosynthetic pathways and fundamental information to facilitate the isolation, characterization, and application of key genes in developing new NR-producing.

Sample scope

Monoisolate

Release date

2023-04-23

Publication

PubMed ID	Article title	Journal name	DOI	Year
34939160	Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum	Science China Life Sciences	10.1007/s11427-021-2033-2	2022

Submitter

Tao Lin (tlin@genetics.ac.cn)

Organization

Institute of Genetics and Development Biology, Chinese Academy of Sciences

Submission date

2017-04-28

Project Data

Resource name	Description
BioSample (40) show	-
SAMC1192704	Pacbio seq of Taraxacum kok-saghyz
SAMC1192703	Hi-C seq of Taraxacum kok-saghyz
SAMC1192702	Bionano seq of Taraxacum kok-saghyz
SAMC327636	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327635	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327634	RNA-seq of Taraxacum kok-saghyz: Young stem
SAMC327633	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327632	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327631	RNA-seq of Taraxacum kok-saghyz: Young main root
SAMC327630	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327629	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327628	RNA-seq of Taraxacum kok-saghyz: Young lateral root
SAMC327627	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327626	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327625	RNA-seq of Taraxacum kok-saghyz: Young leaf
SAMC327624	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327623	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327622	RNA-seq of Taraxacum kok-saghyz: Mature stem
SAMC327621	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327620	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327619	RNA-seq of Taraxacum kok-saghyz: Mature main root
SAMC327618	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327617	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327616	RNA-seq of Taraxacum kok-saghyz: Mature lateral root
SAMC327615	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327614	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327613	RNA-seq of Taraxacum kok-saghyz: Mature leaf
SAMC327612	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327611	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327610	RNA-seq of Taraxacum kok-saghyz: Seed
SAMC327609	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327608	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327607	RNA-seq of Taraxacum kok-saghyz: peduncle
SAMC327606	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327605	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327604	RNA-seq of Taraxacum kok-saghyz: Latex
SAMC327603	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC327602	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC327601	RNA-seq of Taraxacum kok-saghyz: Flower
SAMC012932	Genomic sequence of Taraxacum kok-saghyz Rodin
GSA (2)	-
CRA010603	Raw sequencing data for genome assembly of Taraxacum kok-saghyz Rodin
CRA003851	Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis