| Accession | PRJCA001197 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Title | De novo assembly of rhesus monkey | ||||||||||||||||
| Relevance | Evolution | ||||||||||||||||
| Umbrella project |
eGPS: evolutionary Genotype-Phenotype Systems biology Cranial Capacity & Structure Genetic mechanism and function of key genes in the evolution of animal brain |
||||||||||||||||
| Data types |
Whole genome sequencing
Transcriptome or Gene expression Assembly |
||||||||||||||||
| Organisms | Macaca mulatta | ||||||||||||||||
| Description | We generated 299.6 Gbp SMRT sequencing data (100-fold genome coverage) for rhesus macaque (Macaca mulatta), 304 Gbp BioNano Saphyr sequencing data (101-fold genome coverage), 308 Gbp Hi-C sequencing data (105-fold genome coverage) and 150 Gbp Illumina short-read sequencing data (50-fold genome coverage). Using FALCON assembler and multiple scaffolding strategies, we generate a rhesus assembly (rheMacS) of 2.95 Gbp with contig N50 length of 8.19 Mbp and scaffolds N50 length of 13.64 Mbp. RheMacS improve almost 75 times for contiguity and 15 times completeness comparing to the latest version of rhesus monkey reference genome rheMac8. | ||||||||||||||||
| Sample scope | Monoisolate | ||||||||||||||||
| Release date | 2019-08-19 | ||||||||||||||||
| Publication |
|
||||||||||||||||
| Grants |
|
||||||||||||||||
| Submitter | Yaoxi He (heyaoxi@mail.kiz.ac.cn) | ||||||||||||||||
| Organization | Kunming Institute of Zoology, Chinese Academy of Sciences | ||||||||||||||||
| Submission date | 2019-01-10 |