项目编号 PRJCA001600
项目标题 Accurate quantification of circular RNAs identifies extensive circular isoform switching events
涉及领域 Genetics
数据类型 Transcriptome or Gene expression
Raw sequence reads
物种名称 Homo sapiens
描述信息 In this study, we performed RNA interference-mediated knockdown of TRA2B, PTBP1 and MBNL1 in HeLa cells, and constructed 2x101bp paired end RNA-seq libraries for mock treatment and three knockdown samples. We divided each sample into two fractions, where rRNA depletion and RNase R digestion were permed to one fraction, and the other fraction was only treated by rRNA depletion.
样品范围 Monoisolate
发布日期 2019-07-25
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
31900416 Accurate quantification of circular RNAs identifies extensive circular isoform switching events Nature Communications 10.1038/s41467-019-13840-9 2020
40350413 Transcriptome analysis reveals PTBP1 as a key regulator of circRNA biogenesis BMC Biology 10.1186/s12915-025-02233-8 2025
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 31722031
提交者 Jinyang Zhang (zhangjinyang@biols.ac.cn)
提交单位 Beijing Institutes of Life Sciences
提交日期 2019-07-25

项目包含数据信息

资源名称 描述
BioSample (12)  show -
GSA (1) -
CRA001838 Circular RNAs transcriptome