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Accession PRJCA001611
Title Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence
Relevance Agricultural
Data types Whole genome sequencing
Organisms Brassica napus
Description The goal of this study is to reveal the global pattern of polymorphism in rapeseed (Brassica napus L.) based on resequencing the genomes of a collection of 1007 rapeseed genetic materials originating from major regions of rapeseed production of the world. The data provides a base for genome-wide association analysis of important agronomic and quality traits of rapeseed, such as of flowering time that enable rapeseed to adapt eco-conditions, especially temperature and day length in different parts of the world by dividing themselves into spring, winter and semi-winter eco-groups. The data also help in uncovering the footprints of domestication and breeding, and figure out the structure of the B. napus genome.
Sample scope Multiisolate
Release date 2019-07-28
Publication
PubMed ID Article title Journal name DOI Year
33101613 BnaSNPDB: An interactive web portal for the efficient retrieval and analysis of SNPs among 1,007 rapeseed accessions Computational and Structural Biotechnology Journal 10.1016/j.csbj.2020.09.031 2020
33399824 BnaGVD: A genomic variation database of rapeseed (Brassica napus) Plant & Cell Physiology 10.1093/pcp/pcaa169 2021
37313221 Genotypic variation of tocopherol content in a representative genetic population and genome-wide association study on tocopherol in rapeseed (Brassica napus) Molecular Breeding 10.1007/s11032-023-01394-0 2023
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) International (Regional) Joint Research Programs 31370313
Submitter lixi    Jiang  (1051927088@qq.com)
Organization zhejiang university
Submission date 2019-07-28

Project Data

Resource name Description
BioSample (1007)  show -
GSA (1) -
CRA001854 Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence