项目编号 PRJCA002187
项目标题 Ancient hybridization detection of Ficus plants based on genomic data
涉及领域 Evolution
数据类型 Whole genome sequencing
Genome sequencing and assembly
物种名称 Ficus gasparriniana
Ficus aurea
Eupristina verticillata
Ficus oligodon
Ficus sagittata
Ficus cyrtophylla
Ficus microcarpa
Morus alba
Ficus carica
Ficus cyathistipula
Ficus esquiroliana
Ficus maxima
Ficus religiosa
Ficus vasculosa
Ficus hispida
Ficus adhatodifolia
Ficus microdictya
Antiaris toxicaria
描述信息 We used the de novo sequenced genome of Ficus microcarpa as reference and conduct whole genome sequencing of 17 Moraceae species to investigate the ancient hybridization in different taxonomic level based on phylogenetic network analysis, D-statistics and Cyto-nuclear phylogenetic conflict analysis.
样品范围 Multispecies
发布日期 2020-05-04
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution Cell 10.1016/j.cell.2020.09.043 2020
33531484 Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism Nature Communications 10.1038/s41467-021-20957-3 2021
34691109 Genome-Wide Characterization and Analysis of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Fig ( Ficus carica L.) Frontiers in Plant Science 10.3389/fpls.2021.730692 2021
36186045 Comparative chloroplast genome analysis of Ficus (Moraceae): Insight into adaptive evolution and mutational hotspot regions Frontiers in Plant Science 10.3389/fpls.2022.965335 2022
35252575 The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa Mitochondrial DNA. Part B, Resources 10.1080/23802359.2021.1993097 2022
35087939 The complete chloroplast genome of two related fig species Ficus squamosa and Ficus heterostyla Mitochondrial DNA. Part B, Resources 10.1080/23802359.2021.2024462 2022
35898939 Identification and characterization of auxin response factor (ARF) family members involved in fig ( Ficus carica L.) fruit development PeerJ 10.7717/peerj.13798 2022
36718451 Genome-wide in silico identification of glutathione S-transferase (GST) gene family members in fig ( Ficus carica L.) and expression characteristics during fruit color development PeerJ 10.7717/peerj.14406 2023
41216496 Phylogenomic Analyses and DNA Barcoding Development Within Moraceae: Insights Into Genomic Features, Mutational Hotspots, and Adaptive Evolution Ecology and Evolution 10.1002/ece3.72399 2025
38547397 MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction Bioinformatics 10.1093/bioinformatics/btae154 2024
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 31870359
National Natural Science Foundation of China (NSFC) U1402264
提交者 Jing Lin (lolyemily@163.com)
提交单位 Fujian Agriculture and Forestry University
提交日期 2020-02-02

项目包含数据信息

资源名称 描述
BioSample (33)  show -
GSA (3) -
CRA003434 Eupristina_verticillata Pacbio sequencing
CRA003435 Ficus Pacbio and HiC reads
CRA001150 Ficus genus resequencing