项目编号

PRJCA002366

项目标题

De Novo Domestication Route of Wild Allotetraploid Rice

涉及领域

Model organism

数据类型

Whole genome sequencing
Transcriptome or Gene expression
Variation
Genome sequencing and assembly

物种名称

Oryza
Oryza grandiglumis
Oryza latifolia
Oryza australiensis
Oryza alta
Oryza officinalis

描述信息

We reported an alternative practical strategy of de novo domestication of wild allotetraploid rice. By screening the nature resources of wild allotetraploid rice, we identified one ecotype of O. alta named Polyploid Rice 1 (PPR1), of which an efficient generation and genome editing system was established, and we then assembled its genome into 24 high-quality chromosomes with discriminated homeologous subgenomes. Furthermore, we generated new allotetraploid rice fertilizable in northern China by editing the homologous genes controlling heading date in diploid rice, demonstrating that de novo domesticated allotetraploid rice could be developed into a new staple cereal contributing to the security of world food.

样品范围

Multiisolate

发布日期

2021-02-04

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
33539781	A route to de novo domestication of wild allotetraploid rice	Cell	10.1016/j.cell.2021.01.013	2021
38650702	Genome-wide and pan-genomic analysis reveals rich variants of NBS-LRR genes in a newly developed wild rice line from Oryza alta Swallen	Frontiers in Plant Science	10.3389/fpls.2024.1345708	2024
36325580	Protocol for genome editing in wild allotetraploid rice Oryza alta	STAR Protocols	10.1016/j.xpro.2022.101789	2022

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
National Natural Science Foundation of China (NSFC)		31788103

提交者

Tao Lin (lintao35@cau.edu.cn)

提交单位

China Agricultural University

提交日期

2020-03-11

项目包含数据信息

资源名称	描述
BioSample (74) show	-
SAMC191984	De Novo Domestication Route of Wild Allotetraploid Rice
SAMC144866	DNA-Seq
SAMC144865	Physical map
SAMC144864	DNA-Seq
SAMC144863	RNA-Seq
SAMC144862	RNA-Seq
SAMC144861	RNA-Seq
SAMC144860	RNA-Seq
SAMC144859	RNA-Seq
SAMC144858	RNA-Seq
SAMC144857	RNA-Seq
SAMC144856	RNA-Seq
SAMC144855	RNA-Seq
SAMC144854	RNA-Seq
SAMC144853	RNA-Seq
SAMC144852	RNA-Seq
SAMC144851	RNA-Seq
SAMC144850	RNA-Seq
SAMC144849	RNA-Seq
SAMC144848	RNA-Seq
SAMC144847	RNA-Seq
SAMC144846	RNA-Seq
SAMC144845	RNA-Seq
SAMC144844	RNA-Seq
SAMC144843	RNA-Seq
SAMC144842	RNA-Seq
SAMC144841	RNA-Seq
SAMC144840	RNA-Seq
SAMC144839	RNA-Seq
SAMC144838	RNA-Seq
SAMC144837	DNA-Seq
SAMC144836	DNA-Seq
SAMC144835	DNA-Seq
SAMC144834	DNA-Seq
SAMC144833	DNA-Seq
SAMC144832	DNA-Seq
SAMC144831	DNA-Seq
SAMC144830	DNA-Seq
SAMC144829	DNA-Seq
SAMC144828	DNA-Seq
SAMC144827	DNA-Seq
SAMC144826	DNA-Seq
SAMC144825	DNA-Seq
SAMC144824	DNA-Seq
SAMC144823	DNA-Seq
SAMC144822	DNA-Seq
SAMC144821	DNA-Seq
SAMC144820	DNA-Seq
SAMC144819	DNA-Seq
SAMC144818	DNA-Seq
SAMC144817	DNA-Seq
SAMC144816	DNA-Seq
SAMC144815	DNA-Seq
SAMC144814	DNA-Seq
SAMC144813	DNA-Seq
SAMC144812	DNA-Seq
SAMC144811	DNA-Seq
SAMC144810	DNA-Seq
SAMC144809	DNA-Seq
SAMC144808	DNA-Seq
SAMC144807	DNA-Seq
SAMC144806	DNA-Seq
SAMC144805	DNA-Seq
SAMC144804	DNA-Seq
SAMC144803	DNA-Seq
SAMC144802	DNA-Seq
SAMC144801	DNA-Seq
SAMC144800	DNA-Seq
SAMC144799	DNA-Seq
SAMC144798	DNA-Seq
SAMC144797	DNA-Seq
SAMC144796	DNA-Seq
SAMC144795	DNA-Seq
SAMC144794	DNA-Seq
GSA (1)	-
CRA002431	De Novo Domestication Route of Wild Allotetraploid Rice