项目编号 PRJCA003178
项目标题 Multiomics reveals the effect of root rot on polygonati rhizome and identifies potential pathogens
涉及领域 Agricultural
数据类型 Raw sequence reads
Diversity of Pathogens on Polygonatum cyrtonema
物种名称 Polygonatum cyrtonema
soil metagenome
描述信息 Root (rhizome) rot in Polygonatum plants has received substantial attention because it threatens yield and sustainable utilization in the polygonati rhizome industry. However, the potential pathogens that cause rhizome rot as well as the direct and indirect (via root-microbe associations) strategies by which Polygonatum defends against pathogens remain largely unknown. Herein, we used integrated multiomics of plant-targeted metabolomics and transcriptomics, microbiome and culture-based methods to systematically investigate the interactions between the Polygonatum cyrtonema plantHua, root-associated microbiota and pathogens. We found that root rot inhibited P. cyrtonema rhizome growth and that fresh weight significantly decreased (P<0.001). The transcriptomic and metabonomic results showed that the expression of differentially expressed genes (DEGs) related to specialized metabolic and systemic resistance pathways, such as glycolysis/gluconeogenesis and flavonoid biosynthesis, cycloartenol synthase activity (related to saponin synthesis), mitogen-activated protein kinase (MAPK) signaling and plant hormone signal transduction, was particularly increased in diseased rhizomes. Consistently, the contents of lactose, D-fructose, sarsasapogenin, asperulosidic acid, botulin, myricadoil and other saponins, which are functional medicinal compounds in the P. cyrtonema rhizome, were also increased in diseased plants infected with rhizome rot. The microbiome sequencing and culture results showed that root rot disrupted the P. cyrtonema bacterial and fungal communities and reduced the microbial diversity in the rhizomes and rhizosphere soil. We further found that a clear enrichment of Streptomyces violascens XTBG45 (HJB-XTBG45) in the healthy rhizosphere could control the root rot caused by Fusarium oxysporum and Colletotrichum spaethianum. Taken together, our results indicate that P. cyrtonema can modulate the plant immune system and metabolic processes and enrich beneficial root microbes (rhizome and rhizosphere resistance)biota to defend against pathogens.
样品范围 Multispecies
发布日期 2021-12-27
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
35225655 Multiomics Reveals the Effect of Root Rot on Polygonati Rhizome and Identifies Pathogens and Biocontrol Strain Microbiology Spectrum 10.1128/spectrum.02385-21 2022
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
Chinese Academy of Sciences (CAS) 2017XTBGTOP2
提交者 Zhiqiang Pang (pangzhiqiang@xtbg.ac.cn)
提交单位 Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences
提交日期 2020-08-04

项目包含数据信息

资源名称 描述
BioSample (114)  show -
GSA (1) -
CRA005765 Multiomics reveals the effect of root rot on Polygonatum cyrtonema Hua