| Accession | PRJCA003290 | ||||||||
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| Title | Wheat whole-genome genetic variation map version 1.0(VMap 1.0) | ||||||||
| Relevance | Agricultural | ||||||||
| Data types |
Whole genome sequencing
Map Phenotype or Genotype Variation |
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| Organisms |
Triticum turgidum
Triticum turgidum subsp. paleocolchicum Triticum Triticum petropavlovskyi Aegilops tauschii Triticum aestivum var. vavilovii Triticum urartu Triticum ispahanicum Triticum aestivum Triticum monococcum Triticum monococcum subsp. sinskajae |
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| Description | We developed a high-density genetic variation map (VMap 1.0) of wheat by whole-genome sequencing of all species of AA, AABB and AABBDD genomes within the genus Triticum, and the progenitor of D subgenome of bread wheat, Ae. tauschii. This collection consisted of Triticum species from a wide range of taxonomic groups, geographic distribution, and ploidy levels. A total of 414 accessions of 5 species, 25 subspecies from 71 countries were collected, including 91 diploid Triticum accessions (AA taxa), 30 diploid Ae. tauschii accessions (DD taxa), 121 tetraploid accessions (AABB taxa), and 172 hexaploid accessions (AABBDD taxa). Raw sequence data of 300 accessions are deposited in the current BioProject. The rest of the data from the other 120 accessions are deposited in Sequence Read Archive (SRA) under accession PRJNA439156. | ||||||||
| Sample scope | Multispecies | ||||||||
| Release date | 2020-09-22 | ||||||||
| Grants |
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| Accessions in other database |
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| Submitter | Xuebo Zhao (xuebozhao@genetics.ac.cn) | ||||||||
| Organization | Institute of Genetics and Developmental Biology, Chinese Academy of Sciences | ||||||||
| Submission date | 2020-08-20 |
| Resource name | Description |
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| BioSample (414) show | - |