Accession PRJCA003737
Title A Pig BodyMap Transcriptome Uncovers Diverse Tissue Physiology and Evolutionary Dynamics of Transcription
Relevance Functional Genomics
Data types Transcriptome or Gene expression
Raw sequence reads
High-throughput chromosome conformation capture
Organisms Homo sapiens
Description A comprehensive transcriptome survey of pig (Sus scrofa), provides information essential for a complete understanding of the mechanisms of tissue specialization that underlies economic traits in pig and accelerate the use of pig as a biomedical model. We enhanced the definition of four distinct transcripts for 31 adult tissues and two cell lines of pig, and characterize the transcriptomic features and variability with respect to the known physiology of tissues. We demonstrated the extraordinary diversity among 47 anatomically distinct skeletal muscles, as well as among six adipose depots, which link to their diverse origins, metabolic features, heterogeneous composition, physical activities and mitochondrial pathways. Comparing the transcriptomes of seven homologous tissues of pig with those of nine vertebrates provided insights into the evolutionary divergence in transcription that contributed to the lineage-specific tissue biology. We also jointly analysed the long-range regulation of promoters by their enhancers with downstream transcription in subcutaneous adiposes for six mammals, and illuminated the evolutionary stability of transcription is mainly contribute to the multiple enhancers serve to buffer transcriptional patterns for a target protein coding gene against genetic perturbations, thereby conferring robustness during speciation.
Sample scope Multispecies
Release date 2021-04-28
Grants
Agency program Grant ID Grant title
the National Key R&D Program of China 2018YFD0500403
National Natural Science Foundation of China (NSFC) U19A2036
Submitter Long    Jin  (longjin@sicau.edu.cn)
Organization Sichuan Agricultural University
Submission date 2020-10-22

Project Data

Resource name Description
BioSample (6)  show -