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Accession PRJCA003874
Title Final report of metagenomic analysis
Relevance Environmental
Data types Metagenome
Organisms Populus
Description Illumina HiSeq sequencing platform was used in this study to obtain Raw Data (average Data amount is), Clean Data (average Data amount is) after quality control, and Scaftigs after single sample assembly and mixed assembly. For the results of each sample and mixed assembly, MetaGeneMark was used for gene prediction, and a total of open reading frames (ORFs) were obtained (average). After the redundancy was removed, 10,516,596 ORFs were obtained, with a total length of Mbp, among which the number of complete genes was, and the proportion was. The non-redundant gene set was compared with MicroNR library by BLASTp, and LCA algorithm was used for species annotation. The ratio of annotation to genus and gate was, respectively. DIAMOND software was used to annotate the non-redundant gene set with common functional database , one ORFs was compared to CAZy database, one ORFs to KEGG database, and one ORFs to eggNOG database. Non-redundant gene set and resistance gene database (CARD) were annotated , there is a gene alignment to the CARD database.
Sample scope Environment
Release date 2020-11-16
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) X101SC19090467-Z01
Submitter haofei    wang  (1213442480@qq.com)
Organization Beijing Forestry University
Submission date 2020-11-16

Project Data

Resource name Description
BioSample (24)  show -
GSA (1) -
CRA003528 Drought shifts the microbe communities and functional categories of the microbe gene pool