Accession PRJCA004203
Title Tetrahymena complete MAC genome assembly
Relevance Model organism
Data types Assembly
Organisms Tetrahymena thermophila
Tetrahymena shanghaiensis
Description This project aims to establish a simple approach to assemble complete Tetrahymena complete MAC genomes using ultra-high Oxford Nanopore reads.
Sample scope Monoisolate
Release date 2021-01-11
Publication
PubMed ID Article title Journal name DOI Year
33897985 A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data Computational and Structural Biotechnology Journal 10.1016/j.csbj.2021.04.007 2021
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) National Natural Science Foundation of China (NSFC) 31872221
Submitter Wei    Miao  (miaowei@ihb.ac.cn)
Organization Institute of Hydrobiology, Chinese Academy of Sciences
Submission date 2021-01-06

Project Data

Resource name Description
BioSample (5) -
SAMC307694 Tetrahymena shanghaiensis starved cells for RNA sample
SAMC307693 Tetrahymena shanghaiensis growing cells for RNA sample
SAMC307692 Tetrahymena shanghaiensis growing cells for DNA sample
SAMC307081 Tetrahymena thermophila growing cells for RNA sample
SAMC307079 Tetrahymena thermophila growing cells for DNA sample
GSA (1) -
CRA003720 Tetrahymena complete MAC genome assembly