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项目编号 PRJCA004361
项目标题 A pepper variome map by resequencing of a representative collection of pepper accessions
涉及领域 Agricultural
数据类型 Variation
Raw sequence reads
Genome sequencing
物种名称 Capsicum galapagoense
Capsicum rhomboideum
Capsicum frutescens
Capsicum cardenasii
Capsicum eximium
Capsicum annuum var. glabriusculum
Capsicum minutiflorum
Capsicum pubescens
Capsicum chacoense
Capsicum baccatum var. baccatum
Capsicum baccatum
Capsicum chinense
Capsicum annuum
Capsicum flexuosum
Capsicum annuum var. annuum
描述信息 We resequenced 347 pepper accessions covering 12 species of genus Capsicum from 31 countries, and investigated the genomic selection and genetic variations associated to traits during its domestication and breeding improvement. The 12 Capsicum species include five cultivated species and ten wild species. 311 out of the 347 accessions are belong to C. annuum, including 309 advanced inbred lines and two wild samples. These accessions were resequenced into an average depth of ~9x coverage of the reference genome (C. annuum Zunla-1).
样品范围 Multispecies
发布日期 2021-01-27
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
36176193 Pepper variome reveals the history and key loci associated with fruit domestication and diversification Molecular Plant 10.1016/j.molp.2022.09.021 2022
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Key Technology Research and Development Program of China 2016YFD0100200
提交者 Kang Zhang (zhangkang01@caas.cn)
提交单位 Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
提交日期 2021-01-26

项目包含数据信息

资源名称 描述
BioSample (347)  show -
GSA (1) -
CRA003831 A pepper variome map by resequencing of a representative collection of pepper accessions