项目编号

PRJCA004455

项目标题

A spatiotemporal single-cell atlas of cis-regulatory elements in mouse embryos

涉及领域

Medical

数据类型

Epigenomics
Transcriptome or Gene expression

物种名称

Mus musculus
Mus

描述信息

Here, we report a single-cell resolution comprehensive map of chromatin accessibility together with gene expression for 3 embryonic germ layers (at E7.5) and all representative fetal organs (from E11.5, E12.5 and E13.5) of the mouse embryos. In total, we performed paired scRNA-seq and scATAC-seq to profile more than 500,000 single cells.

样品范围

Single cell

发布日期

2023-02-18

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
36881507	Single-cell chromatin accessibility and transcriptome atlas of mouse embryos	Cell Reports	10.1016/j.celrep.2023.112210	2023
38651869	Ploidy inference from single-cell data: application to human and mouse cell atlases	Genetics	10.1093/genetics/iyae061	2024

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
Ministry of Science and Technology of the People's Republic of China (MOST)	National Key Technologies R&D Program	2019YFA0801700	Molecular Mechanisms of Metabolic and Epigenetic Modification Interactions in Regulating Cell Fate Decisions
Chinese Academy of Sciences (CAS)	Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	XDB38020500

提交者

JiangLab BIG (jianglab-gsa@big.ac.cn)

提交单位

Beijing Institute of Genomics, Chinese Academy of Sciences

提交日期

2021-02-04

项目包含数据信息

资源名称	描述
BioSample (22) show	-
SAMC338313	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-female_E11.5
SAMC338312	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-male_E11.5
SAMC338311	paired scRNA-seq and scATAC-seq of Mus musculus: GermLayer_E7.5
SAMC338310	paired scRNA-seq and scATAC-seq of Mus musculus: Eye_E13.5
SAMC338309	paired scRNA-seq and scATAC-seq of Mus musculus: Heart_E13.5
SAMC338308	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-female_E12.5
SAMC338307	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-male_E12.5
SAMC338306	paired scRNA-seq and scATAC-seq of Mus musculus: ForeLimb_E13.5
SAMC338305	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-female_E13.5
SAMC338304	paired scRNA-seq and scATAC-seq of Mus musculus: Gonad-male_E13.5
SAMC338303	paired scRNA-seq and scATAC-seq of Mus musculus: Kidney_E13.5
SAMC338302	paired scRNA-seq and scATAC-seq of Mus musculus: Intestine_E13.5
SAMC338301	paired scRNA-seq and scATAC-seq of Mus musculus: Stomach_E13.5
SAMC338300	paired scRNA-seq and scATAC-seq of Mus musculus: Lung_E13.5
SAMC338299	paired scRNA-seq and scATAC-seq of Mus musculus: SpinalCord_E13.5
SAMC338298	paired scRNA-seq and scATAC-seq of Mus musculus: Brain-hind_E13.5
SAMC338297	paired scRNA-seq and scATAC-seq of Mus musculus: Brain-mid_E13.5
SAMC338296	paired scRNA-seq and scATAC-seq of Mus musculus: Brain-fore_E13.5
SAMC338295	paired scRNA-seq and scATAC-seq of Mus musculus: Spleen_E13.5
SAMC338294	paired scRNA-seq and scATAC-seq of Mus musculus: Pancreas_E13.5
SAMC338293	paired scRNA-seq and scATAC-seq of Mus musculus: Liver_E13.5
SAMC338292	paired scRNA-seq and scATAC-seq of Mus musculus: Lung_E12.5
GSA (1)	-
CRA003910	Single-cell chromatin accessibility and transcriptome atlas of mouse embryos