Accession

PRJCA004607

Title

Chromosome-level assembly of Gossypium anomalum genome

Relevance

Agricultural

Data types

Whole genome sequencing
Assembly

Organisms

Gossypium anomalum
Gossypium hirsutum

Description

We have demonstrated the power of a high-quality wild species Gossypium anomalum reference genome in identifying agronomic valuable alleles to facilitate interspecific introgression breeding in crop.

Sample scope

Monoisolate

Release date

2022-12-28

Publication

PubMed ID	Article title	Journal name	DOI	Year
35733334	Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding	Plant Communications	10.1016/j.xplc.2022.100350	2022

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31471545
National Natural Science Foundation of China (NSFC)		31801047
National Natural Science Foundation of China (NSFC)		32070544

Submitter

Zhenzhen Xu (lele20032@163.com)

Organization

The Institute of Industrial Crops

Submission date

2021-03-04

Project Data

Resource name	Description
BioSample (78) show	-
SAMC798985	RNA-seq data_3 of fiber samples from CSSL13 at 20 DPA
SAMC798984	RNA-seq data_2 of fiber samples from CSSL13 at 20 DPA
SAMC798983	RNA-seq data_1 of fiber samples from CSSL13 at 20 DPA
SAMC798982	RNA-seq data_3 of fiber samples from CSSL59 at 20 DPA
SAMC798981	RNA-seq data_2 of fiber samples from CSSL59 at 20 DPA
SAMC798980	RNA-seq data_1 of fiber samples from CSSL59 at 20 DPA
SAMC798979	RNA-seq data_3 of fiber samples from Su8289 at 20 DPA
SAMC798978	RNA-seq data_2 of fiber samples from Su8289 at 20 DPA
SAMC798977	RNA-seq data_1 of fiber samples from Su8289 at 20 DPA
SAMC798976	RNA-seq data_15 of leaves from CSSL29 at 72 h after PEG treatment
SAMC798975	RNA-seq data_14 of leaves from CSSL29 at 72 h after PEG treatment
SAMC798974	RNA-seq data_13 of leaves from CSSL29 at 72 h after PEG treatment
SAMC798973	RNA-seq data_12 of leaves from CSSL29 at 24 h after PEG treatment
SAMC798972	RNA-seq data_11 of leaves from CSSL29 at 24 h after PEG treatment
SAMC798971	RNA-seq data_10 of leaves from CSSL29 at 24 h after PEG treatment
SAMC798970	RNA-seq data_9 of leaves from CSSL29 at 12 h after PEG treatment
SAMC798969	RNA-seq data_8 of leaves from CSSL29 at 12 h after PEG treatment
SAMC798968	RNA-seq data_7 of leaves from CSSL29 at 12 h after PEG treatment
SAMC798967	RNA-seq data_6 of leaves from CSSL29 at 6 h after PEG treatment
SAMC798966	RNA-seq data_5 of leaves from CSSL29 at 6 h after PEG treatment
SAMC798965	RNA-seq data_4 of leaves from CSSL29 at 6 h after PEG treatment
SAMC798964	RNA-seq data_3 of leaves from CSSL29 at 0 h after PEG treatment
SAMC798963	RNA-seq data_2 of leaves from CSSL29 at 0 h after PEG treatment
SAMC798962	RNA-seq data_1 of leaves from CSSL29 at 0 h after PEG treatment
SAMC798961	RNA-seq data_15 of leaves from Su8289 at 72 h after PEG treatment
SAMC798960	RNA-seq data_14 of leaves from Su8289 at 72 h after PEG treatment
SAMC798959	RNA-seq data_13 of leaves from Su8289 at 72 h after PEG treatment
SAMC798958	RNA-seq data_12 of leaves from Su8289 at 24 h after PEG treatment
SAMC798957	RNA-seq data_11 of leaves from Su8289 at 24 h after PEG treatment
SAMC798956	RNA-seq data_10 of leaves from Su8289 at 24 h after PEG treatment
SAMC798955	RNA-seq data_9 of leaves from Su8289 at 12 h after PEG treatment
SAMC798954	RNA-seq data_8 of leaves from Su8289 at 12 h after PEG treatment
SAMC798953	RNA-seq data_7 of leaves from Su8289 at 12 h after PEG treatment
SAMC798952	RNA-seq data_6 of leaves from Su8289 at 6 h after PEG treatment
SAMC798951	RNA-seq data_5 of leaves from Su8289 at 6 h after PEG treatment
SAMC798950	RNA-seq data_4 of leaves from Su8289 at 6 h after PEG treatment
SAMC798949	RNA-seq data_3 of leaves from Su8289 at 0 h after PEG treatment
SAMC798948	RNA-seq data_2 of leaves from Su8289 at 0 h after PEG treatment
SAMC798947	RNA-seq data_1 of leaves from Su8289 at 0 h after PEG treatment
SAMC798946	Illumina DNA-seq data_7 of CSSLs and Su8289
SAMC798945	Illumina DNA-seq data_6 of CSSLs and Su8289
SAMC798944	Illumina DNA-seq data_5 of CSSLs and Su8289
SAMC798943	Illumina DNA-seq data_4 of CSSLs and Su8289
SAMC798942	Illumina DNA-seq data_3 of CSSLs and Su8289
SAMC798941	Illumina DNA-seq data_2 of CSSLs and Su8289
SAMC798940	Illumina DNA-seq data_1 of CSSLs and Su8289
SAMC798939	ChIP-seq data_2
SAMC798938	ChIP-seq data_1
SAMC798937	Illumina RNA-seq data_8 of root, stem, leaf and flower from G. anomalum
SAMC798936	Illumina RNA-seq data_7 of root, stem, leaf and flower from G. anomalum
SAMC798935	Illumina RNA-seq data_6 of root, stem, leaf and flower from G. anomalum
SAMC798934	Illumina RNA-seq data_5 of root, stem, leaf and flower from G. anomalum
SAMC798933	Illumina RNA-seq data_4 of root, stem, leaf and flower from G. anomalum
SAMC798932	Illumina RNA-seq data_3 of root, stem, leaf and flower from G. anomalum
SAMC798931	Illumina RNA-seq data_2 of root, stem, leaf and flower from G. anomalum
SAMC798930	Illumina RNA-seq data_1 of root, stem, leaf and flower from G. anomalum
SAMC798929	Hi-C sequening data
SAMC798928	Illumina DNA-seq data_7
SAMC798927	Illumina DNA-seq data_6
SAMC798926	Illumina DNA-seq data_5
SAMC798925	Illumina DNA-seq data_4
SAMC798924	Illumina DNA-seq data_3
SAMC798923	Illumina DNA-seq data_2
SAMC798922	Illumina DNA-seq data_1
SAMC798921	PacBio data_14
SAMC798920	PacBio data_13
SAMC798919	PacBio data_12
SAMC798918	PacBio data_11
SAMC798917	PacBio data_10
SAMC798916	PacBio data_9
SAMC798915	PacBio data_8
SAMC798914	PacBio data_7
SAMC798913	PacBio data_6
SAMC798912	PacBio data_5
SAMC798911	PacBio data_4
SAMC798910	PacBio data_3
SAMC798909	PacBio data_2
SAMC798908	PacBio data_1
GSA (1)	-
CRA007185	Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding