Accession

PRJCA004704

Title

Cis-regulatory elements atlas of the human early fetus by integrative analysis of scRNA-seq and scATAC-seq

Relevance

Model organism

Data types

Epigenomics
Transcriptome or Gene expression
Raw sequence reads

Organisms

Homo sapiens

Description

We did parallel single-cell profiling of RNA and open chromatin of 14 organs ranging from gestational week 8 to gestational week 16.

Sample scope

Single cell

Release date

2022-11-10

Publication

PubMed ID	Article title	Journal name	DOI	Year
	Comprehensive identification of fetal cis-regulatory elements in the human genome by single-cell multi-omics analysis	bioRxiv	10.1101/2021.11.02.466852	2021

Grants

Agency	program	Grant ID	Grant title
Ministry of Science and Technology of the People's Republic of China (MOST)	National Key Technologies R&D Program	2019YFA0801700
Chinese Academy of Sciences (CAS)	Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	XDB38020500

Submitter

Jiang Lan (jiangl@big.ac.cn)

Organization

Beijing Institute of Genomics, Chinese Academy of Sciences

Submission date

2021-03-15

Project Data

Resource name	Description
BioSample (28) show	-
SAMC1650476	paired scRNA-seq and scATAC-seq of human: Thymus&Thyroid_w16
SAMC1650472	paired scRNA-seq and scATAC-seq of human: Thymus&Thyroid_w10
SAMC1650468	paired scRNA-seq and scATAC-seq of human: Stomach_w16
SAMC1650465	paired scRNA-seq and scATAC-seq of human: Stomach_w10
SAMC1650460	paired scRNA-seq and scATAC-seq of human: Spleen_w16
SAMC1650456	paired scRNA-seq and scATAC-seq of human: Spleen_w10
SAMC1650452	paired scRNA-seq and scATAC-seq of human: Small Intestine_w16
SAMC1650448	paired scRNA-seq and scATAC-seq of human: Small Intestine_w10
SAMC1650446	paired scRNA-seq and scATAC-seq of human: Pancreas_w16
SAMC1650443	scATAC-seq of human: Pancreas_w10
SAMC1650439	scATAC-seq of human: Lung_w16
SAMC1650435	paired scRNA-seq and scATAC-seq of human: Lung_w10
SAMC1650432	paired scRNA-seq and scATAC-seq of human: Liver_w16
SAMC1650428	paired scRNA-seq and scATAC-seq of human: Liver_w10
SAMC1650424	paired scRNA-seq and scATAC-seq of human: Limb_w10
SAMC1650421	paired scRNA-seq and scATAC-seq of human: Limb_w8
SAMC1650417	paired scRNA-seq and scATAC-seq of human: Kidney_w16
SAMC1650413	paired scRNA-seq and scATAC-seq of human: Kidney_w10
SAMC1650410	paired scRNA-seq and scATAC-seq of human: Heart_w16
SAMC1650407	paired scRNA-seq and scATAC-seq of human: Heart_w10
SAMC1650402	paired scRNA-seq and scATAC-seq of human: Gonad_w16
SAMC1650398	paired scRNA-seq and scATAC-seq of human: Gonad_w10
SAMC1650393	paired scRNA-seq and scATAC-seq of human: Eye_w16
SAMC1650389	paired scRNA-seq and scATAC-seq of human: Eye_w10
SAMC1650385	paired scRNA-seq and scATAC-seq of human: Eye_w8
SAMC1650380	paired scRNA-seq and scATAC-seq of human: Large_Intestine_w16
SAMC1650376	paired scRNA-seq and scATAC-seq of human: Large_Intestine_w10
SAMC1650372	paired scRNA-seq and scATAC-seq of human:Large_Intestine_w8