项目编号

PRJCA004919

项目标题

Functional allele-specific H3K9me3 and DNA methylation co-marked CpG-rich regions in pre-implantation embryo

涉及领域

Model organism

数据类型

Raw sequence reads

物种名称

Mus musculus

描述信息

Parental DNA methylation and histone modifications undergo distinct global reprogramming in mammalian pre-implantation embryos. Although the interplay between epigenetic modifications is considered to affect the reprogramming, the landscape of epigenetic crosstalk and its effects on embryogenesis are largely unknown. Here, we comprehensively analyzed the association between DNA methylation and H3K9me3 reprogramming in mouse pre-implantation embryos.

样品范围

Multiisolate

发布日期

2022-02-22

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
35484247	Allele-specific H3K9me3 and DNA methylation co-marked CpG-rich regions serve as potential imprinting control regions in pre-implantation embryo	Nature Cell Biology	10.1038/s41556-022-00900-4	2022

实验材料提供者

Shaorong Gao

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
Ministry of Science and Technology of the People's Republic of China (MOST)	National Key Technologies R&D Program	2017YFA0102600
National Natural Science Foundation of China (NSFC)	General Program	32030022
National Natural Science Foundation of China (NSFC)	General Program	31970642
National Natural Science Foundation of China (NSFC)	General Program	31721003
National Natural Science Foundation of China (NSFC)	General Program	31820103009
National Natural Science Foundation of China (NSFC)	General Program	31801059
Other	Other	ZJ2018ZD004	Major Program of Development Fund for Shanghai Zhangjiang National Innovation Demonstration Zone

提交者

Yong Zhang (yzhang@tongji.edu.cn)

提交单位

Tongji University

提交日期

2021-04-30

项目包含数据信息

资源名称	描述
BioSample (75) show	-
SAMC538502	RNA-seq of TE hybrid rep3
SAMC538501	RNA-seq of TE hybrid rep2
SAMC538500	RNA-seq of TE hybrid rep1
SAMC538499	RNA-seq of ICM hybrid rep2
SAMC538498	RNA-seq of ICM hybrid rep1
SAMC538497	RNA-seq of morula hybrid rep3
SAMC538496	RNA-seq of morula hybrid rep2
SAMC538495	RNA-seq of morula hybrid rep1
SAMC538494	RNA-seq of 2-cell hybrid rep3
SAMC538493	RNA-seq of 2-cell hybrid rep2
SAMC538492	RNA-seq of 2-cell hybrid rep1
SAMC353756	RNA-seq of morula AG Kdm4bOE&siHMTs rep3
SAMC353755	RNA-seq of morula AG Kdm4bOE&siHMTs rep2
SAMC353754	RNA-seq of morula AG Kdm4bOE&siHMTs rep1
SAMC353753	RNA-seq of morula GG Kdm4bOE&siHMTs rep2
SAMC353752	RNA-seq of morula GG Kdm4bOE&siHMTs rep1
SAMC353751	RNA-seq of TE AG rep3
SAMC353750	RNA-seq of TE AG rep2
SAMC353749	RNA-seq of TE AG rep1
SAMC353748	RNA-seq of TE GG rep3
SAMC353747	RNA-seq of TE GG rep2
SAMC353746	RNA-seq of TE GG rep1
SAMC353745	RNA-seq of ICM AG rep3
SAMC353744	RNA-seq of ICM AG rep2
SAMC353743	RNA-seq of ICM AG rep1
SAMC353742	RNA-seq of ICM GG rep3
SAMC353741	RNA-seq of ICM GG rep2
SAMC353740	RNA-seq of ICM GG rep1
SAMC353739	RNA-seq of morula AG rep3
SAMC353738	RNA-seq of morula AG rep2
SAMC353737	RNA-seq of morula AG rep1
SAMC353736	RNA-seq of morula GG rep3
SAMC353735	RNA-seq of morula GG rep2
SAMC353734	RNA-seq of morula GG rep1
SAMC353733	RNA-seq of 2-cell AG rep5
SAMC353732	RNA-seq of 2-cell AG rep4
SAMC353731	RNA-seq of 2-cell AG rep3
SAMC353730	RNA-seq of 2-cell AG rep2
SAMC353729	RNA-seq of 2-cell AG rep1
SAMC353728	RNA-seq of 2-cell GG rep3
SAMC353727	RNA-seq of 2-cell GG rep2
SAMC353726	RNA-seq of 2-cell GG rep1
SAMC353725	ChIP-seq of hybrid E6.5 Exe H3K9me3 rep2
SAMC353724	ChIP-seq of hybrid E6.5 Exe H3K9me3 rep1
SAMC353723	ChIP-seq of hybrid E6.5 Epi H3K9me3 rep3
SAMC353722	ChIP-seq of hybrid E6.5 Epi H3K9me3 rep2
SAMC353721	ChIP-seq of hybrid E6.5 Epi H3K9me3 rep1
SAMC353720	ChIP-seq of TE AG H3K9me3 rep2
SAMC353719	ChIP-seq of TE AG H3K9me3 rep1
SAMC353718	ChIP-seq of TE GG H3K9me3 rep2
SAMC353717	ChIP-seq of TE GG H3K9me3 rep1
SAMC353716	ChIP-seq of ICM AG H3K9me3 rep2
SAMC353715	ChIP-seq of ICM AG H3K9me3 rep1
SAMC353714	ChIP-seq of ICM GG H3K9me3 rep2
SAMC353713	ChIP-seq of ICM GG H3K9me3 rep1
SAMC353712	ChIP-seq of morula AG H3K9me3 rep2
SAMC353711	ChIP-seq of morula AG H3K9me3 rep1
SAMC353710	ChIP-seq of morula GG H3K9me3 rep2
SAMC353709	ChIP-seq of morula GG H3K9me3 rep1
SAMC353708	ChIP-seq of 2-cell AG H3K9me3 rep2
SAMC353707	ChIP-seq of 2-cell AG H3K9me3 rep1
SAMC353706	ChIP-seq of 2-cell GG H3K9me3 rep2
SAMC353705	ChIP-seq of 2-cell GG H3K9me3 rep1
SAMC353704	WGBS of hybrid E6.5 extra-embryonic ectoderm
SAMC353703	WGBS of hybrid E6.5 epiblast
SAMC353702	WGBS of morula AG Kdm4bOE&siHMTs
SAMC353701	WGBS of morula GG Kdm4bOE&siHMTs
SAMC353700	WGBS of TE AG
SAMC353699	WGBS of TE GG
SAMC353698	WGBS of ICM AG
SAMC353697	WGBS of ICM GG
SAMC353696	WGBS of morula AG
SAMC353695	WGBS of morula GG
SAMC353694	WGBS of 2-cell AG
SAMC353693	WGBS of 2-cell GG
GSA (1)	-
CRA004123	Functional allele-specific H3K9me3 and DNA methylation co-marked CpG-rich regions in pre-implantation embryo