Accession PRJCA005394
Title single cell RNA-seq of human spermatogenesis
Relevance Medical
Data types Transcriptome or Gene expression
Raw sequence reads
Organisms Homo sapiens
Description Spermatogenesis generates mature male gametes and is critical for the proper transmission of genetic information between generations. However, the developmental landscapes of human spermatogenesis remain unknown. Here, we performed single-cell RNA sequencing (scRNA-seq) analysis for 2,854 testicular cells from donors with normal spermatogenesis and 174 testicular cells from one nonobstructive azoospermia (NOA) donor. A hierarchical model was established, which was characterized by the sequential and stepwise development of three spermatogonia subtypes, seven spermatocyte subtypes, and four spermatid subtypes. Further analysis identified several stage-specific marker genes of human germ cells, such as HMGA1, PIWIL4, TEX29, SCML1, and CCDC112. Moreover, we identified altered gene expression patterns in the testicular somatic cells of one NOA patient via scRNA-seq analysis, paving the way for further diagnosis of male infertility. Our work allows for the reconstruction of transcriptional programs inherent to sequential cell fate transition during human spermatogenesis and has implications for deciphering male-related reproductive disorders.
Sample scope Single cell
Release date 2021-06-07
Publication
PubMed ID Article title Journal name DOI Year
30174296 10.1016/j.stem.2018.08.007
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) Key Program 2017YFA0105001
National Natural Science Foundation of China (NSFC) Key Program 2016YFC1000606
National Natural Science Foundation of China (NSFC) Key Program 2017YFA0102702
National Natural Science Foundation of China (NSFC) Key Program 2017YFA0103403
National Natural Science Foundation of China (NSFC) 31671544
National Natural Science Foundation of China (NSFC) 31371506
National Natural Science Foundation of China (NSFC) 82071711
China Postdoctoral Science Foundation 2017M622728
Key Research & Development Program of Bioland Laboratory 2018GZR110104002
Guangzhou science and technology project key project topic 201904020031
Submitter Xiaoyang Zhao (zhaoxiaoyang@smu.edu.cn)
Organization Southern Medical University
Submission date 2021-05-29

Project Data

Resource name Description
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