Accession

PRJCA005435

Title

sex determination and turnover of Salix chaenomeloides and Salix arbutifolia

Relevance

Evolution

Data types

Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads

Organisms

Salix arbutifolia
Salix chaenomeloides

Description

In this study, we sequenced, assembled and annotated the genomes of Salix chaenomeloides and Salix arbutifolia. At the same time, multiple female and male individuals were sequenced to identify the sex determination region. Finally, based on the assemblies of sex determining regions to reveal the history of sex chromosome turnover.

Sample scope

Multispecies

Release date

2022-09-06

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China		31922061
National Natural Science Foundation of China		31561123001
National Natural Science Foundation of China		41871044
National Natural Science Foundation of China		31500502
the National Key Research and Development Program of China		2016YFD0600101
Fundamental Research Funds for the Central Universities		2020SCUNL103
Fundamental Research Funds for the Central Universities		SCU2019D013

Submitter

Deyan Wang (wangdeyan_1@163.com)

Organization

Sichuan University

Submission date

2021-06-10

Project Data

Resource name	Description
BioSample (139) show	-
SAMC394354	Illumina-seq of male S. arbutifolia: AM30
SAMC394353	Illumina-seq of male S. arbutifolia: AM29
SAMC394352	Illumina-seq of male S. arbutifolia: AM28
SAMC394351	Illumina-seq of male S. arbutifolia: AM27
SAMC394350	Illumina-seq of male S. arbutifolia: AM25
SAMC394349	Illumina-seq of male S. arbutifolia: AM23
SAMC394348	Illumina-seq of male S. arbutifolia: AM22
SAMC394347	Illumina-seq of male S. arbutifolia: AM21
SAMC394346	Illumina-seq of male S. arbutifolia: AM20
SAMC394345	Illumina-seq of male S. arbutifolia: AM19
SAMC394344	Illumina-seq of male S. arbutifolia: AM18
SAMC394343	Illumina-seq of male S. arbutifolia: AM17
SAMC394342	Illumina-seq of male S. arbutifolia: AM16
SAMC394341	Illumina-seq of male S. arbutifolia: AM15
SAMC394340	Illumina-seq of male S. arbutifolia: AM14
SAMC394339	Illumina-seq of male S. arbutifolia: AM13
SAMC394338	Illumina-seq of male S. arbutifolia: AM12
SAMC394337	Illumina-seq of male S. arbutifolia: AM11-2
SAMC394336	Illumina-seq of male S. arbutifolia: AM10
SAMC394335	Illumina-seq of male S. arbutifolia: AM9
SAMC394334	Illumina-seq of male S. arbutifolia: AM8
SAMC394333	Illumina-seq of male S. arbutifolia: AM5
SAMC394332	Illumina-seq of male S. arbutifolia: AM4
SAMC394331	Illumina-seq of male S. arbutifolia: AM3
SAMC394330	Illumina-seq of male S. arbutifolia: AM2
SAMC394329	Illumina-seq of male S. arbutifolia: AM1
SAMC394328	Illumina-seq of female S. arbutifolia: AF30
SAMC394327	Illumina-seq of female S. arbutifolia: AF29
SAMC394326	Illumina-seq of female S. arbutifolia: AF28
SAMC394325	Illumina-seq of female S. arbutifolia: AF27
SAMC394324	Illumina-seq of female S. arbutifolia: AF26
SAMC394323	Illumina-seq of female S. arbutifolia: AF25
SAMC394322	Illumina-seq of female S. arbutifolia: AF24
SAMC394321	Illumina-seq of female S. arbutifolia: AF23
SAMC394320	Illumina-seq of female S. arbutifolia: AF22
SAMC394319	Illumina-seq of female S. arbutifolia: AF21
SAMC394318	Illumina-seq of female S. arbutifolia: AF20
SAMC394317	Illumina-seq of female S. arbutifolia: AF19
SAMC394316	Illumina-seq of female S. arbutifolia: AF18
SAMC394315	Illumina-seq of female S. arbutifolia: AF17
SAMC394314	Illumina-seq of female S. arbutifolia: AF16
SAMC394313	Illumina-seq of female S. arbutifolia: AF15
SAMC394312	Illumina-seq of female S. arbutifolia: AF14
SAMC394311	Illumina-seq of female S. arbutifolia: AF13
SAMC394310	Illumina-seq of female S. arbutifolia: AF12
SAMC394309	Illumina-seq of female S. arbutifolia: AF11
SAMC394308	Illumina-seq of female S. arbutifolia: AF10
SAMC394307	Illumina-seq of female S. arbutifolia: AF9
SAMC394306	Illumina-seq of female S. arbutifolia: AF8
SAMC394305	Illumina-seq of female S. arbutifolia: AF7
SAMC394304	Illumina-seq of female S. arbutifolia: AF6
SAMC394303	Illumina-seq of female S. arbutifolia: AF5
SAMC394302	Illumina-seq of female S. arbutifolia: AF4
SAMC394301	Illumina-seq of female S. arbutifolia: AF3
SAMC394300	Illumina-seq of female S. arbutifolia: AF2
SAMC394299	Illumina-seq of female S. arbutifolia: AF1
SAMC394298	Illumina-seq of male S. chaenomeloides: CM30
SAMC394297	Illumina-seq of male S. chaenomeloides: CM29
SAMC394296	Illumina-seq of male S. chaenomeloides: CM28
SAMC394295	Illumina-seq of male S. chaenomeloides: CM27
SAMC394294	Illumina-seq of male S. chaenomeloides: CM26
SAMC394293	Illumina-seq of male S. chaenomeloides: CM25
SAMC394292	Illumina-seq of male S. chaenomeloides: CM24
SAMC394291	Illumina-seq of male S. chaenomeloides: CM23
SAMC394290	Illumina-seq of male S. chaenomeloides: CM22
SAMC394289	Illumina-seq of male S. chaenomeloides: CM21
SAMC394288	Illumina-seq of male S. chaenomeloides: CM20
SAMC394287	Illumina-seq of male S. chaenomeloides: CM19
SAMC394286	Illumina-seq of male S. chaenomeloides: CM18
SAMC394285	Illumina-seq of male S. chaenomeloides: CM17
SAMC394284	Illumina-seq of male S. chaenomeloides: CM16
SAMC394283	Illumina-seq of male S. chaenomeloides: CM15
SAMC394282	Illumina-seq of male S. chaenomeloides: CM14
SAMC394281	Illumina-seq of male S. chaenomeloides: CM13
SAMC394280	Illumina-seq of male S. chaenomeloides: CM12
SAMC394279	Illumina-seq of male S. chaenomeloides: CM11
SAMC394278	Illumina-seq of male S. chaenomeloides: CM10
SAMC394277	Illumina-seq of male S. chaenomeloides: CM9
SAMC394276	Illumina-seq of male S. chaenomeloides: CM8
SAMC394275	Illumina-seq of male S. chaenomeloides: CM7
SAMC394274	Illumina-seq of male S. chaenomeloides: CM6
SAMC394273	Illumina-seq of male S. chaenomeloides: CM5
SAMC394272	Illumina-seq of male S. chaenomeloides: CM4
SAMC394271	Illumina-seq of male S. chaenomeloides: CM3
SAMC394270	Illumina-seq of male S. chaenomeloides: CM2
SAMC394269	Illumina-seq of male S. chaenomeloides: CM1
SAMC394268	Illumina-seq of female S. chaenomeloides: CF30
SAMC394267	Illumina-seq of female S. chaenomeloides: CF29
SAMC394266	Illumina-seq of female S. chaenomeloides: CF28
SAMC394265	Illumina-seq of female S. chaenomeloides: CF27
SAMC394264	Illumina-seq of female S. chaenomeloides: CF26
SAMC394263	Illumina-seq of female S. chaenomeloides: CF25
SAMC394262	Illumina-seq of female S. chaenomeloides: CF24
SAMC394261	Illumina-seq of female S. chaenomeloides: CF23
SAMC394260	Illumina-seq of female S. chaenomeloides: CF22
SAMC394259	Illumina-seq of female S. chaenomeloides: CF21
SAMC394258	Illumina-seq of female S. chaenomeloides: CF20
SAMC394257	Illumina-seq of female S. chaenomeloides: CF18
SAMC394256	Illumina-seq of female S. chaenomeloides: CF17
SAMC394255	Illumina-seq of female S. chaenomeloides: CF16
SAMC394254	Illumina-seq of female S. chaenomeloides: CF15
SAMC394253	Illumina-seq of female S. chaenomeloides: CF13
SAMC394252	Illumina-seq of female S. chaenomeloides: CF12
SAMC394251	Illumina-seq of female S. chaenomeloides: CF11
SAMC394250	Illumina-seq of female S. chaenomeloides: CF9
SAMC394249	Illumina-seq of female S. chaenomeloides: CF8
SAMC394248	Illumina-seq of female S. chaenomeloides: CF7
SAMC394247	Illumina-seq of female S. chaenomeloides: CF6
SAMC394246	Illumina-seq of female S. chaenomeloides: CF5
SAMC394245	Illumina-seq of female S. chaenomeloides: CF4
SAMC394244	Illumina-seq of female S. chaenomeloides: CF3
SAMC394243	Illumina-seq of female S. chaenomeloides: CF2
SAMC394242	Illumina-seq of female S. chaenomeloides: CF1
SAMC394241	methylation data of female S. arbutifolia flower bud
SAMC394240	methylation data of male S. arbutifolia flower bud
SAMC394239	RNA-seq of female S. arbutifolia flower bud
SAMC394238	RNA-seq of male S. arbutifolia flower bud
SAMC394237	sRNA-seq of female S. arbutifolia flower bud
SAMC394236	sRNA-seq of male S. arbutifolia flower bud
SAMC394235	methylation data of female S. chaenomeloides flower bud
SAMC394234	methylation data of male S. chaenomeloides flower bud
SAMC394233	RNA-seq of female S. chaenomeloides flower bud
SAMC394232	RNA-seq of male S. chaenomeloides flower bud
SAMC394231	sRNA-seq of female S. chaenomeloides flower bud
SAMC394230	sRNA-seq of male S. chaenomeloides flower bud
SAMC394229	nanopore-seq of male S. arbutifolia genome
SAMC394228	Illumina-seq of male S. arbutifolia genome
SAMC394227	hic-seq of female S. arbutifolia genome
SAMC394226	nanopore-seq of female S. arbutifolia genome
SAMC394225	Illumina-seq of female S. arbutifolia genome
SAMC394224	nanopore-seq of male S. chaenomeloides genome
SAMC394223	Illumina-seq of male S. chaenomeloides genome
SAMC394222	hic-seq of female S. chaenomeloides genome
SAMC394221	picbio-seq of female S. chaenomeloides genome
SAMC394220	Illumina-seq of female S. chaenomeloides genome
SAMC393401	genome assembly of male Salix arbutifolia
SAMC393400	genome assembly of female Salix arbutifolia
SAMC393398	genome assembly of male Salix chaenomeloides
SAMC393397	genome assembly of female Salix chaenomeloides
GSA (1)	-
CRA004400	Sequencing data of female and male S. chaenomeloides and S. arbutifolia