Accession

PRJCA005526

Title

histone methylation contribute to the rice root microbiota assembly and hub spcies regulation

Relevance

Agricultural

Data types

Metagenome

Organisms

root metagenome

Description

Plants have a close relationship with their root microbiota, which comprises a complex microbial network. Histone methylation is an important epigenetic modification influencing multiple plant traits. We established that the rice histone methylation regulates the structure and composition of the root microbiota, especially the hub species in the microbial network. DJ-jmj703 (defective in histone H3K4 demethylation) and ZH11-sdg714 (defective in H3K9 methylation) showed significant different root microbiota compared with the corresponding wild types at the phylum and family levels. In the root microbial network, 35 of 44 hub species in the top 10 modules were regulated by at least one histone methylation-related gene. These observations establish that the rice histone methylation plays a pivotal role in regulating the assembly of the root microbiota, providing insights into the links between plant epigenetic regulation and root microbiota.

Sample scope

Monoisolate

Release date

2021-06-18

Publication

PubMed ID	Article title	Journal name	DOI	Year
34391677	The rice histone methylation regulates hub species of the root microbiota	Journal of Genetics and Genomics	10.1016/j.jgg.2021.06.005	2021

Grants

Agency	program	Grant ID	Grant title
Chinese Academy of Sciences (CAS)		XDA24020104
Chinese Academy of Sciences (CAS)		XDB27030201

Submitter

Yong-Xin Liu (woodcorpse@163.com)

Organization

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Submission date

2021-06-18

Project Data

Resource name	Description
BioSample (246) show	-
SAMC397564	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs15
SAMC397563	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs14
SAMC397562	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs13
SAMC397561	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs12
SAMC397560	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs11
SAMC397559	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs10
SAMC397558	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs09
SAMC397557	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs08
SAMC397556	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs07
SAMC397555	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs06
SAMC397554	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs05
SAMC397553	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs04
SAMC397552	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs03
SAMC397551	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs02
SAMC397550	16S amplicon sequencing of rice root microbiome sample Zh11WtLsRs01
SAMC397549	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR15
SAMC397548	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR14
SAMC397547	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR13
SAMC397546	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR12
SAMC397545	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR11
SAMC397544	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR10
SAMC397543	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR09
SAMC397542	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR08
SAMC397541	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR07
SAMC397540	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR06
SAMC397539	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR05
SAMC397538	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR04
SAMC397537	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR03
SAMC397536	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR02
SAMC397535	16S amplicon sequencing of rice root microbiome sample Zh11WtLsR01
SAMC397534	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR15
SAMC397533	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR14
SAMC397532	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR13
SAMC397531	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR12
SAMC397530	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR11
SAMC397529	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR10
SAMC397528	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR09
SAMC397527	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR08
SAMC397526	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR07
SAMC397525	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR06
SAMC397524	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR05
SAMC397523	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR04
SAMC397522	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR03
SAMC397521	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR02
SAMC397520	16S amplicon sequencing of rice root microbiome sample SdgMut2LsR01
SAMC397519	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR15
SAMC397518	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR14
SAMC397517	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR13
SAMC397516	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR12
SAMC397515	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR11
SAMC397514	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR10
SAMC397513	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR09
SAMC397512	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR08
SAMC397511	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR07
SAMC397510	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR06
SAMC397509	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR05
SAMC397508	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR04
SAMC397507	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR03
SAMC397506	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR02
SAMC397505	16S amplicon sequencing of rice root microbiome sample SdgMut1LsR01
SAMC397504	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs15
SAMC397503	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs14
SAMC397502	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs13
SAMC397501	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs12
SAMC397500	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs11
SAMC397499	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs10
SAMC397498	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs09
SAMC397497	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs08
SAMC397496	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs07
SAMC397495	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs06
SAMC397494	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs05
SAMC397493	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs04
SAMC397492	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs03
SAMC397491	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs02
SAMC397490	16S amplicon sequencing of rice root microbiome sample SdgMut2LsRs01
SAMC397489	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs15
SAMC397488	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs14
SAMC397487	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs13
SAMC397486	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs12
SAMC397485	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs11
SAMC397484	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs10
SAMC397483	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs09
SAMC397482	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs08
SAMC397481	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs07
SAMC397480	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs06
SAMC397479	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs05
SAMC397478	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs04
SAMC397477	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs03
SAMC397476	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs02
SAMC397475	16S amplicon sequencing of rice root microbiome sample SdgMut1LsRs01
SAMC397474	16S amplicon sequencing of rice root microbiome sample NipWtLsRs15
SAMC397473	16S amplicon sequencing of rice root microbiome sample NipWtLsRs14
SAMC397472	16S amplicon sequencing of rice root microbiome sample NipWtLsRs13
SAMC397471	16S amplicon sequencing of rice root microbiome sample NipWtLsRs12
SAMC397470	16S amplicon sequencing of rice root microbiome sample NipWtLsRs11
SAMC397469	16S amplicon sequencing of rice root microbiome sample NipWtLsRs10
SAMC397468	16S amplicon sequencing of rice root microbiome sample NipWtLsRs09
SAMC397467	16S amplicon sequencing of rice root microbiome sample NipWtLsRs08
SAMC397466	16S amplicon sequencing of rice root microbiome sample NipWtLsRs07
SAMC397465	16S amplicon sequencing of rice root microbiome sample NipWtLsRs06
SAMC397464	16S amplicon sequencing of rice root microbiome sample NipWtLsRs05
SAMC397463	16S amplicon sequencing of rice root microbiome sample NipWtLsRs04
SAMC397462	16S amplicon sequencing of rice root microbiome sample NipWtLsRs03
SAMC397461	16S amplicon sequencing of rice root microbiome sample NipWtLsRs02
SAMC397460	16S amplicon sequencing of rice root microbiome sample NipWtLsRs01
SAMC397459	16S amplicon sequencing of rice root microbiome sample NipWtLsR15
SAMC397458	16S amplicon sequencing of rice root microbiome sample NipWtLsR14
SAMC397457	16S amplicon sequencing of rice root microbiome sample NipWtLsR13
SAMC397456	16S amplicon sequencing of rice root microbiome sample NipWtLsR12
SAMC397455	16S amplicon sequencing of rice root microbiome sample NipWtLsR11
SAMC397454	16S amplicon sequencing of rice root microbiome sample NipWtLsR10
SAMC397453	16S amplicon sequencing of rice root microbiome sample NipWtLsR09
SAMC397452	16S amplicon sequencing of rice root microbiome sample NipWtLsR08
SAMC397451	16S amplicon sequencing of rice root microbiome sample NipWtLsR07
SAMC397450	16S amplicon sequencing of rice root microbiome sample NipWtLsR06
SAMC397449	16S amplicon sequencing of rice root microbiome sample NipWtLsR05
SAMC397448	16S amplicon sequencing of rice root microbiome sample NipWtLsR04
SAMC397447	16S amplicon sequencing of rice root microbiome sample NipWtLsR03
SAMC397446	16S amplicon sequencing of rice root microbiome sample NipWtLsR02
SAMC397445	16S amplicon sequencing of rice root microbiome sample NipWtLsR01
SAMC397444	16S amplicon sequencing of rice root microbiome sample DclMut2LsR15
SAMC397443	16S amplicon sequencing of rice root microbiome sample DclMut2LsR14
SAMC397442	16S amplicon sequencing of rice root microbiome sample DclMut2LsR13
SAMC397441	16S amplicon sequencing of rice root microbiome sample DclMut2LsR12
SAMC397440	16S amplicon sequencing of rice root microbiome sample DclMut2LsR11
SAMC397439	16S amplicon sequencing of rice root microbiome sample DclMut2LsR10
SAMC397438	16S amplicon sequencing of rice root microbiome sample DclMut2LsR09
SAMC397437	16S amplicon sequencing of rice root microbiome sample DclMut2LsR08
SAMC397436	16S amplicon sequencing of rice root microbiome sample DclMut2LsR07
SAMC397435	16S amplicon sequencing of rice root microbiome sample DclMut2LsR06
SAMC397434	16S amplicon sequencing of rice root microbiome sample DclMut2LsR05
SAMC397433	16S amplicon sequencing of rice root microbiome sample DclMut2LsR04
SAMC397432	16S amplicon sequencing of rice root microbiome sample DclMut2LsR03
SAMC397431	16S amplicon sequencing of rice root microbiome sample DclMut2LsR02
SAMC397430	16S amplicon sequencing of rice root microbiome sample DclMut2LsR01
SAMC397429	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs15
SAMC397428	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs14
SAMC397427	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs13
SAMC397426	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs12
SAMC397425	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs11
SAMC397424	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs10
SAMC397423	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs09
SAMC397422	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs08
SAMC397421	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs07
SAMC397420	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs06
SAMC397419	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs05
SAMC397418	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs04
SAMC397417	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs03
SAMC397416	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs02
SAMC397415	16S amplicon sequencing of rice root microbiome sample DclMut2LsRs01
SAMC397414	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs15
SAMC397413	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs14
SAMC397412	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs13
SAMC397411	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs12
SAMC397410	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs11
SAMC397409	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs10
SAMC397408	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs09
SAMC397407	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs08
SAMC397406	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs07
SAMC397405	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs06
SAMC397404	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs05
SAMC397403	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs04
SAMC397402	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs03
SAMC397401	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs02
SAMC397400	16S amplicon sequencing of rice root microbiome sample DclMut1LsRs01
SAMC397399	16S amplicon sequencing of rice root microbiome sample DclMut1LsR15
SAMC397398	16S amplicon sequencing of rice root microbiome sample DclMut1LsR14
SAMC397397	16S amplicon sequencing of rice root microbiome sample DclMut1LsR13
SAMC397396	16S amplicon sequencing of rice root microbiome sample DclMut1LsR12
SAMC397395	16S amplicon sequencing of rice root microbiome sample DclMut1LsR11
SAMC397394	16S amplicon sequencing of rice root microbiome sample DclMut1LsR10
SAMC397393	16S amplicon sequencing of rice root microbiome sample DclMut1LsR09
SAMC397392	16S amplicon sequencing of rice root microbiome sample DclMut1LsR08
SAMC397391	16S amplicon sequencing of rice root microbiome sample DclMut1LsR07
SAMC397390	16S amplicon sequencing of rice root microbiome sample DclMut1LsR06
SAMC397389	16S amplicon sequencing of rice root microbiome sample DclMut1LsR05
SAMC397388	16S amplicon sequencing of rice root microbiome sample DclMut1LsR04
SAMC397387	16S amplicon sequencing of rice root microbiome sample DclMut1LsR03
SAMC397386	16S amplicon sequencing of rice root microbiome sample DclMut1LsR02
SAMC397385	16S amplicon sequencing of rice root microbiome sample DclMut1LsR01
SAMC397384	16S amplicon sequencing of rice root microbiome sample DjWtLsRs15
SAMC397383	16S amplicon sequencing of rice root microbiome sample DjWtLsRs14
SAMC397382	16S amplicon sequencing of rice root microbiome sample DjWtLsRs13
SAMC397381	16S amplicon sequencing of rice root microbiome sample DjWtLsRs12
SAMC397380	16S amplicon sequencing of rice root microbiome sample DjWtLsRs11
SAMC397379	16S amplicon sequencing of rice root microbiome sample DjWtLsRs10
SAMC397378	16S amplicon sequencing of rice root microbiome sample DjWtLsRs09
SAMC397377	16S amplicon sequencing of rice root microbiome sample DjWtLsRs08
SAMC397376	16S amplicon sequencing of rice root microbiome sample DjWtLsRs07
SAMC397375	16S amplicon sequencing of rice root microbiome sample DjWtLsRs06
SAMC397374	16S amplicon sequencing of rice root microbiome sample DjWtLsRs05
SAMC397373	16S amplicon sequencing of rice root microbiome sample DjWtLsRs04
SAMC397372	16S amplicon sequencing of rice root microbiome sample DjWtLsRs03
SAMC397371	16S amplicon sequencing of rice root microbiome sample DjWtLsRs02
SAMC397370	16S amplicon sequencing of rice root microbiome sample DjWtLsRs01
SAMC397369	16S amplicon sequencing of rice root microbiome sample DjWtLsR15
SAMC397368	16S amplicon sequencing of rice root microbiome sample DjWtLsR14
SAMC397367	16S amplicon sequencing of rice root microbiome sample DjWtLsR13
SAMC397366	16S amplicon sequencing of rice root microbiome sample DjWtLsR12
SAMC397365	16S amplicon sequencing of rice root microbiome sample DjWtLsR11
SAMC397364	16S amplicon sequencing of rice root microbiome sample DjWtLsR10
SAMC397363	16S amplicon sequencing of rice root microbiome sample DjWtLsR09
SAMC397362	16S amplicon sequencing of rice root microbiome sample DjWtLsR08
SAMC397361	16S amplicon sequencing of rice root microbiome sample DjWtLsR07
SAMC397360	16S amplicon sequencing of rice root microbiome sample DjWtLsR06
SAMC397359	16S amplicon sequencing of rice root microbiome sample DjWtLsR05
SAMC397358	16S amplicon sequencing of rice root microbiome sample DjWtLsR04
SAMC397357	16S amplicon sequencing of rice root microbiome sample DjWtLsR03
SAMC397356	16S amplicon sequencing of rice root microbiome sample DjWtLsR02
SAMC397355	16S amplicon sequencing of rice root microbiome sample DjWtLsR01
SAMC397354	16S amplicon sequencing of rice root microbiome sample JmjMutLsR15
SAMC397353	16S amplicon sequencing of rice root microbiome sample JmjMutLsR14
SAMC397352	16S amplicon sequencing of rice root microbiome sample JmjMutLsR13
SAMC397351	16S amplicon sequencing of rice root microbiome sample JmjMutLsR12
SAMC397350	16S amplicon sequencing of rice root microbiome sample JmjMutLsR11
SAMC397349	16S amplicon sequencing of rice root microbiome sample JmjMutLsR10
SAMC397348	16S amplicon sequencing of rice root microbiome sample JmjMutLsR09
SAMC397347	16S amplicon sequencing of rice root microbiome sample JmjMutLsR08
SAMC397346	16S amplicon sequencing of rice root microbiome sample JmjMutLsR07
SAMC397345	16S amplicon sequencing of rice root microbiome sample JmjMutLsR06
SAMC397344	16S amplicon sequencing of rice root microbiome sample JmjMutLsR05
SAMC397343	16S amplicon sequencing of rice root microbiome sample JmjMutLsR04
SAMC397342	16S amplicon sequencing of rice root microbiome sample JmjMutLsR03
SAMC397341	16S amplicon sequencing of rice root microbiome sample JmjMutLsR02
SAMC397340	16S amplicon sequencing of rice root microbiome sample JmjMutLsR01
SAMC397339	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs15
SAMC397338	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs14
SAMC397337	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs13
SAMC397336	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs12
SAMC397335	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs11
SAMC397334	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs10
SAMC397333	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs09
SAMC397332	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs08
SAMC397331	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs07
SAMC397330	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs06
SAMC397329	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs05
SAMC397328	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs04
SAMC397327	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs03
SAMC397326	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs02
SAMC397325	16S amplicon sequencing of rice root microbiome sample JmjMutLsRs01
SAMC397324	16S amplicon sequencing of rice root microbiome sample LsBs06
SAMC397323	16S amplicon sequencing of rice root microbiome sample LsBs05
SAMC397322	16S amplicon sequencing of rice root microbiome sample LsBs04
SAMC397321	16S amplicon sequencing of rice root microbiome sample LsBs03
SAMC397320	16S amplicon sequencing of rice root microbiome sample LsBs02
SAMC397319	16S amplicon sequencing of rice root microbiome sample LsBs01
GSA (1)	-
CRA004442	16S amplicon sequencing data for rice histone methylation project