Accession

PRJCA005914

Title

Whole genome sequencing of saccharomyces cerevisiae for analysis of aneuploidy during laboratory evolution

Relevance

Evolution

Data types

Whole genome sequencing

Organisms

Saccharomyces cerevisiae

Description

Previous studies have shown that aneuploidy could be as an short-term adaptive method under certain circumstances such as gene loss.In this study, we explore how saccharomyces cerevisiae adapt to gene loss in the long-term evolution.

Sample scope

Multiisolate

Release date

2024-04-22

Publication

PubMed ID	Article title	Journal name	DOI	Year
	Point mutations of homologs as an adaptive solution to the gene loss	Journal of Genetics and Genomics	10.1016/j.jgg.2023.02.012	2023

Grants

Agency	program	Grant ID	Grant title
ShanghaiTech University		NA

Submitter

Liye Zhang (zhangly@shanghaitech.edu.cn)

Organization

ShanghaiTech University

Submission date

2021-07-22

Project Data

Resource name	Description
BioSample (22) show	-
SAMC434090	single colony NO.6 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks
SAMC434089	single colony NO.6 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 4
SAMC434088	single colony NO.6 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 3
SAMC434087	single colony NO.6 after ULP2 evicted in the strain of MHY1379
SAMC434086	single colony NO.5 after ULP2 evicted in the strain of MHY1379 and continue culture for 4 weeks
SAMC434085	single colony NO.5 after ULP2 evicted in the strain of MHY1379 and continue culture for 2 weeks
SAMC434084	single colony NO.5 after ULP2 evicted in the strain of MHY1379
SAMC434083	single colony NO.4 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks
SAMC434082	single colony NO.4 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 4
SAMC434081	single colony NO.4 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 3
SAMC434080	single colony NO.4 after ULP2 evicted in the strain of MHY1379
SAMC434079	single colony NO.3 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 2
SAMC434078	single colony NO.3 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks and isolate colony 1
SAMC434077	single colony NO.3 after ULP2 evicted in the strain of MHY1379 and continue culture for 6 weeks
SAMC434076	single colony NO.3 after ULP2 evicted in the strain of MHY1379
SAMC434075	single colony NO.2 after ULP2 evicted in the strain of MHY1379 and continue culture for 8 weeks
SAMC434074	single colony NO.2 after ULP2 evicted in the strain of MHY1379
SAMC434073	single colony NO.1 after ULP2 evicted in the strain of MHY1379 and continue culture for 2 weeks
SAMC434072	single colony NO.1 after ULP2 evicted in the strain of MHY1379
SAMC434071	the strain MHY1379 as control
SAMC434070	single colony NO.3 after ULP2 evicted in the strain of MHY1379(the gene ccr4 was knocked out previously)
SAMC434069	single colony NO.1 after ULP2 evicted in the strain of MHY1379(the gene ccr4 was knocked out previously)
GSA (1)	-
CRA004581	Whole genome sequencing of saccharomyces cerevisiae for analysis of aneuploidy during laboratory evolution