Accession PRJCA006366
Title Tree shrew genome annotation
Relevance Model organism
Data types Transcriptome or Gene expression
Organisms Tupaia chinensis
Description The Chinese tree shrew (Tupaia belangeri chinensis) is emerging as an important experimental animal in multiple fields of biomedical research. A comprehensive reference genome annotation for both mRNA and long non-coding RNA (lncRNA) is crucial for developing animal models using this species. In this study, we collected a total of 230 high-quality RNA sequencing datasets and two long-read isoform sequencing (ISO-seq) datasets and improved the annotation of our previously assembled high-quality chromosome level tree shrew genome.
Sample scope Multiisolate
Release date 2021-08-31
PubMed ID Article title Journal name DOI Year
34581030 Comprehensive annotation of the Chinese tree shrew genome by large-scale RNA sequencing and long-read isoform sequencing Zoological Research 10.24272/j.issn.2095-8137.2021.272 2021
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) General Program U1902215
External link
External link Link description tree shrew database
Submitter Maosen    Ye  (
Organization Kunming Institute of Zoology, Chinese Academy of Sciences
Submission date 2021-08-31

Project Data

Resource name Description
BioSample (92)  show -
GSA (1) -
CRA004880 Tree shrew transcriptomic datasets of normal and pathological tissues and cells