Accession

PRJCA006366

Title

Tree shrew genome annotation

Relevance

Model organism

Data types

Transcriptome or Gene expression

Organisms

Tupaia chinensis

Description

The Chinese tree shrew (Tupaia belangeri chinensis) is emerging as an important experimental animal in multiple fields of biomedical research. A comprehensive reference genome annotation for both mRNA and long non-coding RNA (lncRNA) is crucial for developing animal models using this species. In this study, we collected a total of 230 high-quality RNA sequencing datasets and two long-read isoform sequencing (ISO-seq) datasets and improved the annotation of our previously assembled high-quality chromosome level tree shrew genome.

Sample scope

Multiisolate

Release date

2021-08-31

Publication

PubMed ID	Article title	Journal name	DOI	Year
34581030	Comprehensive annotation of the Chinese tree shrew genome by large-scale RNA sequencing and long-read isoform sequencing	Zoological Research	10.24272/j.issn.2095-8137.2021.272	2021

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)	General Program	U1902215

External link

External link	Link description
http://www.treeshrewdb.org	tree shrew database

Submitter

Maosen Ye (yemaosen@mail.kiz.ac.cn)

Organization

Kunming Institute of Zoology, Chinese Academy of Sciences

Submission date

2021-08-31

Project Data

Resource name	Description
BioSample (92) show	-
SAMC452125	RNA-seq of Chinese tree shrew
SAMC452124	RNA-seq of Chinese tree shrew
SAMC452123	RNA-seq of Chinese tree shrew
SAMC452122	RNA-seq of Chinese tree shrew
SAMC452121	RNA-seq of Chinese tree shrew
SAMC452120	RNA-seq of Chinese tree shrew
SAMC452119	RNA-seq of Chinese tree shrew
SAMC452118	RNA-seq of Chinese tree shrew
SAMC452117	RNA-seq of Chinese tree shrew
SAMC452116	RNA-seq of Chinese tree shrew
SAMC452115	RNA-seq of Chinese tree shrew
SAMC452114	RNA-seq of Chinese tree shrew
SAMC452113	RNA-seq of Chinese tree shrew
SAMC452112	RNA-seq of Chinese tree shrew
SAMC452111	RNA-seq of Chinese tree shrew
SAMC452110	RNA-seq of Chinese tree shrew
SAMC452109	RNA-seq of Chinese tree shrew
SAMC452108	RNA-seq of Chinese tree shrew
SAMC452107	RNA-seq of Chinese tree shrew
SAMC452106	RNA-seq of Chinese tree shrew
SAMC452105	RNA-seq of Chinese tree shrew
SAMC452104	RNA-seq of Chinese tree shrew
SAMC452103	RNA-seq of Chinese tree shrew
SAMC452102	RNA-seq of Chinese tree shrew
SAMC452101	RNA-seq of Chinese tree shrew
SAMC452100	RNA-seq of Chinese tree shrew
SAMC452099	RNA-seq of Chinese tree shrew
SAMC452098	RNA-seq of Chinese tree shrew
SAMC452097	RNA-seq of Chinese tree shrew
SAMC452096	RNA-seq of Chinese tree shrew
SAMC452095	RNA-seq of Chinese tree shrew
SAMC452094	RNA-seq of Chinese tree shrew
SAMC452093	RNA-seq of Chinese tree shrew
SAMC452092	RNA-seq of Chinese tree shrew
SAMC452091	RNA-seq of Chinese tree shrew
SAMC452090	RNA-seq of Chinese tree shrew
SAMC452089	RNA-seq of Chinese tree shrew
SAMC452088	RNA-seq of Chinese tree shrew
SAMC452087	RNA-seq of Chinese tree shrew
SAMC452086	RNA-seq of Chinese tree shrew
SAMC452085	RNA-seq of Chinese tree shrew
SAMC452084	RNA-seq of Chinese tree shrew
SAMC452083	RNA-seq of Chinese tree shrew
SAMC452082	RNA-seq of Chinese tree shrew
SAMC452081	RNA-seq of Chinese tree shrew
SAMC452080	RNA-seq of Chinese tree shrew
SAMC452079	RNA-seq of Chinese tree shrew
SAMC452078	RNA-seq of Chinese tree shrew
SAMC452077	RNA-seq of Chinese tree shrew
SAMC452076	RNA-seq of Chinese tree shrew
SAMC452075	RNA-seq of Chinese tree shrew
SAMC452074	RNA-seq of Chinese tree shrew
SAMC452073	RNA-seq of Chinese tree shrew
SAMC452072	RNA-seq of Chinese tree shrew
SAMC452071	ISO-seq of Chinese tree shrew
SAMC452070	ISO-seq of Chinese tree shrew
SAMC452069	RNA-seq of Chinese tree shrew
SAMC452068	RNA-seq of Chinese tree shrew
SAMC452067	RNA-seq of Chinese tree shrew
SAMC452066	RNA-seq of Chinese tree shrew
SAMC452065	RNA-seq of Chinese tree shrew
SAMC452064	RNA-seq of Chinese tree shrew
SAMC452063	RNA-seq of Chinese tree shrew
SAMC452062	RNA-seq of Chinese tree shrew
SAMC452061	RNA-seq of Chinese tree shrew
SAMC452060	RNA-seq of Chinese tree shrew
SAMC452059	RNA-seq of Chinese tree shrew
SAMC452058	RNA-seq of Chinese tree shrew
SAMC452057	RNA-seq of Chinese tree shrew
SAMC452056	RNA-seq of Chinese tree shrew
SAMC452055	RNA-seq of Chinese tree shrew
SAMC452054	RNA-seq of Chinese tree shrew
SAMC452053	RNA-seq of Chinese tree shrew
SAMC452052	RNA-seq of Chinese tree shrew
SAMC452051	RNA-seq of Chinese tree shrew
SAMC452050	RNA-seq of Chinese tree shrew
SAMC452049	RNA-seq of Chinese tree shrew
SAMC452048	RNA-seq of Chinese tree shrew
SAMC452047	RNA-seq of Chinese tree shrew
SAMC452046	RNA-seq of Chinese tree shrew
SAMC452045	RNA-seq of Chinese tree shrew
SAMC452044	RNA-seq of Chinese tree shrew
SAMC452043	RNA-seq of Chinese tree shrew
SAMC452042	RNA-seq of Chinese tree shrew
SAMC452041	RNA-seq of Chinese tree shrew
SAMC452040	RNA-seq of Chinese tree shrew
SAMC452039	RNA-seq of Chinese tree shrew
SAMC452038	RNA-seq of Chinese tree shrew
SAMC452037	RNA-seq of Chinese tree shrew
SAMC452036	RNA-seq of Chinese tree shrew
SAMC452035	RNA-seq of Chinese tree shrew
SAMC452034	RNA-seq of Chinese tree shrew
GSA (1)	-
CRA004880	Tree shrew transcriptomic datasets of normal and pathological tissues and cells