项目编号 PRJCA006378
项目标题 Copy number variation analysis in Chinese children with complete atrioventricular canal and single ventricle
涉及领域 Medical
数据类型 Phenotype or Genotype
物种名称 Homo sapiens
描述信息 Congenital heart disease (CHD) is one of the most common birth defects. Copy number variations (CNVs) have been proved to be important genetic factors that contribute to CHD. Here we screened genome-wide CNVs in Chinese children with complete atrioventricular canal (CAVC) and single ventricle (SV), since there were scarce researches dedicated to these two types of CHD. We screened CNVs in 262 sporadic CAVC cases and 259 sporadic SV cases respectively, using a customized SNP array. The detected CNVs were annotated and filtered using available databases. Among 262 CAVC patients, we identified 6 potentially-causative CNVs in 43 individuals (16.41%, 43/262), including 2 syndrome-related CNVs (7q11.23 and 8q24.3 deletion). Surprisingly, 90.70% CAVC patients with detected CNVs (39/43) were found to carry duplications of 21q11.2-21q22.3, which were recognized as trisomy 21 (Down syndrome, DS). In CAVC with DS patients, the female to male ratio was 1.6:1.0 (24:15), and the rate of pulmonary hypertension (PH) was 41.03% (16/39). Additionally, 6 potentially-causative CNVs were identified in the SV patients (2.32%, 6/259), and none of them was trisomy 21. Most CNVs identified in our cohort were classified as rare (<1%), occurring just once among CAVC or SV individuals except the 21q11.2-21q22.3 duplication (14.89%) in CAVC cohort. Our study identified 12 potentially-causative CNVs in 262 CAVC and 259 SV patients, representing the largest cohort of these two CHD types in Chinese population. The results provided strong correlation between CAVC and DS, which also showed sex difference and high incidence of PH. The presence of potentially-causative CNVs suggests the etiology of complex CHD is incredibly diverse, and CHD candidate genes remain to be discovered.
样品范围 Multiisolate
发布日期 2021-12-09
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
34627233 Copy number variation analysis in Chinese children with complete atrioventricular canal and single ventricle BMC medical genomics 10.1186/s12920-021-01090-y 2021
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 81801460
National Natural Science Foundation of China (NSFC) 81871717
National Natural Science Foundation of China (NSFC) 81672090
Shanghai Sailing Program 18YF1414800
Collaborative Innovation Program of Shanghai Municipal Health Commission 2020CXJQ01
Shanghai Municipal Science and Technology Major Project 2017SHZDZX01
Science and Technology Commission of Shanghai Municipality 20JC1418500
Shanghai Key Laboratory of Clinical Molecular Diagnostics for Pediatrics 20dz2260900
提交者 xiaoqing  zhang (qingxiao18@163.com)
提交单位 Shanghai Children's Medical Center
提交日期 2021-09-01

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