Accession PRJCA006702
Title Long-C
Relevance Agricultural
Data types Raw sequence reads
Organisms Arabidopsis
Description Genome architecture is critical for regulating various cellular functions.While plenty of Hi-C datasets with pairwise interaction information exists, characterization of multi-way chromatin interaction is still missing in plant. Here, we developed Long-C in plant , a Nanopore-based method that directly sequences the DNA concatemers generated by proximity-based ligation, to extract higher-order chromosome interaction in Arabidopsis
Sample scope Monoisolate
Release date 2022-06-22
Publication
PubMed ID Article title Journal name DOI Year
35313066 Pore-C simultaneously captures genome-wide multi-way chromatin interaction and associated DNA methylation status in Arabidopsis Plant Biotechnology Journal 10.1111/pbi.13811 2022
Grants
Agency program Grant ID Grant title
No funding support
Submitter Zhuowen    Li  (11930458@mail.sustech.edu.cn)
Organization Southern University of Science and Technology
Submission date 2021-09-26

Project Data

Resource name Description
BioSample (2) -
SAMC462203 Pore-C Rep2 for Col-0
SAMC462202 Pore-C Rep1 for Col-0
GSA (1) -
CRA005105 Pore-C