项目编号

PRJCA007414

项目标题

Genome-resolved metagenomics using short-, long-reads and MetaHiC approches

涉及领域

Environmental

数据类型

Metagenome
Metagenomic assembly

物种名称

synthetic metagenome
human gut metagenome

描述信息

In this study, we set out to find recommended strategies for recovering high-quality MAGs by assessing mainstream sequencing technologies (i.e., mNGS, TGS, and MetaHiC) and different downstream analysis tools. To ensure the robustness of our evaluation, we used the GIS20 mock community, CAMISIM simulated community and three stool samples from three healthy volunteers.

样品范围

Environment

发布日期

2021-12-01

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
38233391	Effective binning of metagenomic contigs using contrastive multi-view representation learning	Nature Communications	10.1038/s41467-023-44290-z	2024
40128535	Benchmarking metagenomic binning tools on real datasets across sequencing platforms and binning modes	Nature Communications	10.1038/s41467-025-57957-6	2025
37387171	SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing	Bioinformatics	10.1093/bioinformatics/btad209	2023

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
National Natural Science Foundation of China (NSFC)		61932008

提交者

Longhao Jia (3230973338@qq.com)

提交单位

Fudan University

提交日期

2021-12-01

项目包含数据信息

资源名称	描述
BioSample (7) show	-
SAMC515480	human facel F
SAMC515479	human facel B
SAMC515478	human facel A
SAMC515477	The human gastrointestinal tract sample2 simulated by CAMISIM with 46 strains.
SAMC515476	The human gastrointestinal tract sample1 simulated by CAMISIM with 63 strains.
SAMC515475	The human gastrointestinal tract sample0 simulated by CAMISIM with 69 strains.
SAMC496252	The GIS20 mock community was constructed using 20 publicly available strains from the American Type Culture Collection (ATCC) and Leibniz Institute DSMZ with known abundances (abundances ranged from 0.1-30%).
GSA (3)	-
CRA005488	The CAMISIM simulated community
CRA005487	The GIS20 mock community
CRA005489	The human gut community