Accession PRJCA007804
Title Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution
Relevance Evolution
Data types Transcriptome or Gene expression
Raw sequence reads
Organisms Deschampsia cespitosa
Anthoxanthum odoratum
Aira praecox
Lolium
Agropyron mongolicum
Briza maxima
Elymus
Elymus cognatus
Leymus chinensis
Brachypodium pinnatum
Phalaris aquatica
Stipa papposa
Avenula pubescens
Brachypodium sylvaticum
Jarava ichu
Poa
Leucopoa
Arrhenatherum elatius
Neomolinia mandshurica
Anthoxanthum occidentale
Nassella pulchra
Dasypyrum villosum
Avena sativa
Gastridium phleoides
Phalaris arundinacea
Sesleria albicans
Stipa capillacea
Kengyilia melanthera
Koeleria litvinowii
Littledalea racemosa
Campeiostachys nutans
Cinna arundinacea
Milium effusum
Sesleria autumnalis
Catapodium rigidum
Parapholis strigosa
Achnatherum pekinense
Alopecurus japonicus
Neomolinia japonica
Festuca myuros
Elymus ciliaris
Oloptum miliaceum
Achnatherum inebrians
Schizachne purpurascens
Glyceria
Leymus arenarius
Agrostis
Bromus remotiflorus
Brylkinia caudata
Patis coreana
Chascolytrum subaristatum
Sinochasea trigyna
Cinna latifolia
Puccinellia chinampoensis
Leymus secalinus
Trisetum spicatum
Hordeum murinum
Lamarckia aurea
Helictotrichon tibeticum
Bromus madritensis
Piptochaetium fimbriatum
Apera interrupta
Torreyochloa pallida
Phaenosperma globosum
Avenella flexuosa
Agropyron cristatum
Kengyilia hirsuta
Sesleria caerulea
Bromus tectorum
Nassella tenuissima
Stipa hymenoides
Briza media
Holcus mollis
Piptatherum munroi
Phleum pratense
Phalaris minor
Beckmannia syzigachne
Anthoxanthum glabrum
Sphenopholis obtusata
Aira caryophyllea
Deschampsia
Nassella
Alopecurus aequalis
Diarrhena obovata
Duthiea brachypodium
Catabrosa aquatica
Avena barbata
Anemanthele lessoniana
Sibirotrisetum bifidum
Puccinellia
Holcus lanatus
Catapodium marinum
Elymus hystrix
Stipa capillata
Lagurus ovatus
Psammochloa villosa
Pentapogon crinitus
Stipa roylei
Description Pooideae is the biggest subfamily of Poaeceae with ~3,900 species (34% of Poaceae species), similar in size to moderately large families like Brassicaceae , Rosaceae and Apiaceae, and larger than 96% of angiosperm families. It contains important crops including wheat, barley and oat. So far, however, many of the relationships among Pooideae tribes and subtribes remain unclear or inconsistent relying largely on plastid markers. In this project, we aim to resolve its phylogeny by using hundreds to thousands of low/single copy nuclear genes from transcriptome data. Based on the phylogeny, we further conducted molecular clock analysis, ancestral character analyses, diversification rate analyses, gene duplication detection and molecular evolution of related genes, all these together provide clues to the possible factors of adaptive evolution of temperate grasses.
Sample scope Multispecies
Release date 2022-12-31
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) N/A
Submitter lin    zhang  (niuniu8zhuzhu@126.com)
Organization Fudan University
Submission date 2022-01-03

Project Data

Resource name Description
BioSample (103)  show -
GSA (1) -
CRA005880 Phylogeny of Pooideae and factors of their adaptive evolution