| Accession | PRJCA008088 | ||||||||||||||||||||||||
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| Title | RVFScan predicts virulence factor genes and hypervirulence of clinical metagenome | ||||||||||||||||||||||||
| Relevance | Medical | ||||||||||||||||||||||||
| Data types |
Whole genome sequencing
Metagenome |
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| Organisms |
Acinetobacter baumannii
archaea Bacteria Pseudomonas aeruginosa Klebsiella pneumoniae Staphylococcus aureus |
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| Description | RVFScan can be applied directly to metagenomic reads to detect VFG without assembly and is suitable for low-biomass and high complexity clinical samples. The combination of RVFScan and high-frequency VFG profile of hvKP enables rapid clinical identification and symptomatic treatment of hvKP. This strategy can also be applied to the identification and the clinical anti-infective treatment of other hypervirulent pathogens. | ||||||||||||||||||||||||
| Sample scope | Multispecies | ||||||||||||||||||||||||
| Release date | 2022-03-24 | ||||||||||||||||||||||||
| Publication |
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| Grants |
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| Submitter | Shu Fan (fanshu@hugobiotech.com) | ||||||||||||||||||||||||
| Organization | Hugobiotech Beijing Co.,Ltd. | ||||||||||||||||||||||||
| Submission date | 2022-01-26 |