项目编号 PRJCA008853
项目标题 Identifying SARS-CoV-2-specific TCRs and their epitopes of long-term memory T cells 7-8 months after the infection of COVID-19
涉及领域 Medical
数据类型 Single cell sequencing
物种名称 Homo sapiens
描述信息 Long-term T cell responses are crucial for efficient protection against SARS-CoV-2 variants. Although T cell epitopes were identified, the exact sequences of the cross-reactive TCRs are unknown. Here, we predicted relatively conserved T cell epitopes among SARS-CoV-2, SARS-COV and other five coronaviruses. Then, to evaluate the long-term T cell immunity, we collected peripheral blood mononuclear cells (PBMCs) from 18 recovered donors 7-8 months after the infection of COVID-19. Predicted epitopes were constructed into tandem minigenes (TMGs) and transfected into engineered K562 cells expressing a single HLA allele. After the co-culture of PBMCs and K562 cells, T cells were analyzed and sorted for single-cell transcriptome profiling coupled with TCR sequencing. With single-cell information, we constructed 34 TCR-engineered T cells as candidates for recognizing SARS-CoV-2 antigens and 19 of them turned out to be responsive to a specific epitope. Furthermore, many of the TCRs hold cross-reactivity to mutant antigens with comparable levels of activation, providing potential protection to SARS-CoV-2 variants.
样品范围 Single cell
发布日期 2024-01-01
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
39496850 Identification of virus epitopes and reactive T-cell receptors from memory T cells without peptide synthesis Communications Biology 10.1038/s42003-024-07048-x 2024
实验材料提供者 Chongqing Medical University
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
China Postdoctoral Science Foundation 2020T130061ZX
提交者 Xun Lan (xlan@tsinghua.edu.cn)
提交单位 Tsinghua University
提交日期 2022-03-27

项目包含数据信息

资源名称 描述
BioSample (11)  show -