Accession

PRJCA011679

Title

Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice

Relevance

Model organism

Data types

Whole genome sequencing
Transcriptome or Gene expression

Organisms

Mus musculus domesticus
Mus musculus
Mus musculus castaneus

Description

(1) Whole genome resequencing of 36 wild mice, including 11 M. m. domesticus, 9 M. m. musculus, and 16 M. m. castaneus. (2)RNA-Seq of 5 tamed (C57BL6/J) mice and 5 wild mice, including hypothalamus, hippocampus, frontal lobe, heart, liver, and lung of each mouse.

Sample scope

Multiisolate

Release date

2022-09-06

Publication

PubMed ID	Article title	Journal name	DOI	Year
36163035	Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice	Genome Biology	10.1186/s13059-022-02772-1	2022

Grants

Agency	program	Grant ID
Chinese Academy of Sciences (CAS)	Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	XDB11050300
Chinese Academy of Sciences (CAS)	Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	XDPB16
National Natural Science Foundation of China (NSFC)	Major Program	32090020
National Natural Science Foundation of China (NSFC)	Key Program	31330013
Chinese Academy of Sciences (CAS)	External Cooperation Program	152111KYSB20150023
Chinese Academy of Sciences (CAS)	External Cooperation Program	152111KYSB20160089
Chinese Academy of Sciences (CAS)	Science and Technology Service Network Initiative of the Chinese Academy of Sciences	KFJ-STS-ZDTP-2021-002
State Key Laboratory of Integrated Management of Pest Insects and Rodents	State Key Laboratory of Integrated Management of Pest Insects and Rodents	ChineseIPM1615
Czech Academy of Sciences	Czech Science Foundation grant	16-23773S
Chinese Academy of Sciences (CAS)	CAS Key Technology Talent Program	None

Submitter

Ming Liu (ming_ing1983@126.com)

Organization

Institute of Zoology, Chinese Academy of Sciences

Submission date

2022-09-05

Project Data

Resource name	Description
BioSample (96) show	-
SAMC871868	RNA-seq of mouse tissue
SAMC871867	RNA-seq of mouse tissue
SAMC871866	RNA-seq of mouse tissue
SAMC871865	RNA-seq of mouse tissue
SAMC871864	RNA-seq of mouse tissue
SAMC871863	RNA-seq of mouse tissue
SAMC871862	RNA-seq of mouse tissue
SAMC871861	RNA-seq of mouse tissue
SAMC871860	RNA-seq of mouse tissue
SAMC871859	RNA-seq of mouse tissue
SAMC871858	RNA-seq of mouse tissue
SAMC871857	RNA-seq of mouse tissue
SAMC871856	RNA-seq of mouse tissue
SAMC871855	RNA-seq of mouse tissue
SAMC871854	RNA-seq of mouse tissue
SAMC871853	RNA-seq of mouse tissue
SAMC871852	RNA-seq of mouse tissue
SAMC871851	RNA-seq of mouse tissue
SAMC871850	RNA-seq of mouse tissue
SAMC871849	RNA-seq of mouse tissue
SAMC871848	RNA-seq of mouse tissue
SAMC871847	RNA-seq of mouse tissue
SAMC871846	RNA-seq of mouse tissue
SAMC871845	RNA-seq of mouse tissue
SAMC871844	RNA-seq of mouse tissue
SAMC871843	RNA-seq of mouse tissue
SAMC871842	RNA-seq of mouse tissue
SAMC871841	RNA-seq of mouse tissue
SAMC871840	RNA-seq of mouse tissue
SAMC871839	RNA-seq of mouse tissue
SAMC871838	RNA-seq of mouse tissue
SAMC871837	RNA-seq of mouse tissue
SAMC871836	RNA-seq of mouse tissue
SAMC871835	RNA-seq of mouse tissue
SAMC871834	RNA-seq of mouse tissue
SAMC871833	RNA-seq of mouse tissue
SAMC871832	RNA-seq of mouse tissue
SAMC871831	RNA-seq of mouse tissue
SAMC871830	RNA-seq of mouse tissue
SAMC871829	RNA-seq of mouse tissue
SAMC871828	RNA-seq of mouse tissue
SAMC871827	RNA-seq of mouse tissue
SAMC871826	RNA-seq of mouse tissue
SAMC871825	RNA-seq of mouse tissue
SAMC871824	RNA-seq of mouse tissue
SAMC871823	RNA-seq of mouse tissue
SAMC871822	RNA-seq of mouse tissue
SAMC871821	RNA-seq of mouse tissue
SAMC871820	RNA-seq of mouse tissue
SAMC871819	RNA-seq of mouse tissue
SAMC871818	RNA-seq of mouse tissue
SAMC871817	RNA-seq of mouse tissue
SAMC871816	RNA-seq of mouse tissue
SAMC871815	RNA-seq of mouse tissue
SAMC871814	RNA-seq of mouse tissue
SAMC871813	RNA-seq of mouse tissue
SAMC871812	RNA-seq of mouse tissue
SAMC871811	RNA-seq of mouse tissue
SAMC871810	RNA-seq of mouse tissue
SAMC871809	RNA-seq of mouse tissue
SAMC871808	whole genome sequencing of mouse
SAMC871807	whole genome sequencing of mouse
SAMC871806	whole genome sequencing of mouse
SAMC871805	whole genome sequencing of mouse
SAMC871804	whole genome sequencing of mouse
SAMC871803	whole genome sequencing of mouse
SAMC871802	whole genome sequencing of mouse
SAMC871801	whole genome sequencing of mouse
SAMC871800	whole genome sequencing of mouse
SAMC871799	whole genome sequencing of mouse
SAMC871798	whole genome sequencing of mouse
SAMC871797	whole genome sequencing of mouse
SAMC871796	whole genome sequencing of mouse
SAMC871795	whole genome sequencing of mouse
SAMC871794	whole genome sequencing of mouse
SAMC871793	whole genome sequencing of mouse
SAMC871792	whole genome sequencing of mouse
SAMC871791	whole genome sequencing of mouse
SAMC871790	whole genome sequencing of mouse
SAMC871789	whole genome sequencing of mouse
SAMC871788	whole genome sequencing of mouse
SAMC871787	whole genome sequencing of mouse
SAMC871786	whole genome sequencing of mouse
SAMC871785	whole genome sequencing of mouse
SAMC871784	whole genome sequencing of mouse
SAMC871783	whole genome sequencing of mouse
SAMC871782	whole genome sequencing of mouse
SAMC871781	whole genome sequencing of mouse
SAMC871780	whole genome sequencing of mouse
SAMC871779	whole genome sequencing of mouse
SAMC871778	whole genome sequencing of mouse
SAMC871777	whole genome sequencing of mouse
SAMC871776	whole genome sequencing of mouse
SAMC871775	whole genome sequencing of mouse
SAMC871774	whole genome sequencing of mouse
SAMC871773	whole genome sequencing of mouse
GSA (1)	-
CRA008086	Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice