项目编号 PRJCA011976
项目标题 Genomic landscape of the expanded reference genomes for cultivated bacteria from human gut
涉及领域 Model organism
数据类型 Assembly
物种名称 Faecalibacillus faecis
Bacteroides fragilis
Paenibacillus macerans
Paraprevotella clara
Coprobacter fastidiosus
Eubacterium callanderi
Parasutterella excrementihominis
Bacillus sp. (in: firmicutes)
Fusobacterium polymorphum
Pseudoruminococcus massiliensis
Streptococcus mutans
Lacticaseibacillus paracasei
Parabacteroides bouchesdurhonensis
Amedibacterium intestinale
Eubacterium limosum
Lactobacillus sp.
Catenibacterium sp.
Clostridium cochlearium
Streptococcus agalactiae
Agathobacter sp.
Cronobacter sakazakii
Leuconostoc mesenteroides
Phocaeicola dorei
Vagococcus bubulae
Butyricimonas faecihominis
Clostridium baratii
Weissella viridescens
Alistipes finegoldii
Bifidobacterium breve
Bilophila wadsworthia
Blautia wexlerae
Enterocloster sp.
Mitsuokella multacida
Enterocloster aldenensis
Clostridium fessum
Bacteroides cellulosilyticus
Acidaminococcus intestini
Fusobacterium varium
Ruthenibacterium lactatiformans
Segatella buccae
Enterobacter kobei
Prevotella denticola
[Ruminococcus] torques
Paenibacillus sp.
Levilactobacillus brevis
Aerococcus urinaeequi
Faecalibacterium sp.
Lactobacillus delbrueckii
Bacillus glycinifermentans
Coprococcus catus
Veillonella parvula
Bifidobacterium pseudocatenulatum
Paeniclostridium sordellii
Eisenbergiella tayi
Anaerotignum sp.
Lactobacillus panisapium
Lactobacillus amylovorus
Proteus mirabilis
Klebsiella africana
Microbacterium testaceum
unclassified Faecalibacillus
Allisonella histaminiformans
Weissella confusa
Desulfovibrio legallii
Gemmiger formicilis
Bacillus smithii
Phocaeicola sp.
Enterococcus faecium
Blautia massiliensis (ex Durand et al. 2017)
Phocaeicola vulgatus
Faecalitalea cylindroides
Ligilactobacillus agilis
Terrisporobacter glycolicus
Limosilactobacillus mucosae
Bifidobacterium bifidum
Acetatifactor sp.
Schaalia turicensis
Collinsella intestinalis
Faecalibacillus intestinalis
Escherichia coli
Streptococcus lutetiensis
Prevotella sp.
Streptococcus parasanguinis
Alistipes putredinis
Caldibacillus thermoamylovorans
Streptococcus anginosus
[Eubacterium] siraeum
Lactobacillus acidophilus
Clostridium perfringens
Eggerthella sinensis
Fusobacterium mortiferum
Alistipes sp.
Enterobacter ludwigii
Streptococcus salivarius
Citrobacter amalonaticus
Bacteroides eggerthii
Pediococcus pentosaceus
Bifidobacterium adolescentis
Eubacterium sp.
Anaerococcus vaginalis
Cutibacterium avidum
Citrobacter gillenii
Bacillus velezensis
Lactiplantibacillus plantarum
Vagococcus fluvialis
Holdemania filiformis
Ligilactobacillus ruminis
Klebsiella variicola
Holdemanella biformis
Streptococcus infantarius
Enterococcus avium
Klebsiella aerogenes
Limosilactobacillus portuensis
Streptococcus pasteurianus
unclassified Oscillospiraceae
Phocaeicola plebeius
Enterococcus casseliflavus
Staphylococcus capitis
Enterocloster bolteae
Roseburia intestinalis
Enterococcus thailandicus
Anaerostipes caccae
Enterococcus asini
Longicatena caecimuris
Segatella copri
Bacteroides finegoldii
Enterococcus faecalis
Lactococcus lactis
Lachnospiraceae bacterium
Clostridium butyricum
Klebsiella quasipneumoniae
Streptococcus halitosis
Oscillospiraceae bacterium
Alistipes communis
Bifidobacterium longum
Agathobaculum sp.
unclassified Lachnospiraceae
Ligilactobacillus acidipiscis
Rhizobium sp.
Chryseobacterium indologenes
Enterococcus gallinarum
Megasphaera elsdenii
Cloacibacillus evryensis
Pediococcus acidilactici
Butyribacter intestini
Citrobacter portucalensis
Cutibacterium acnes
Veillonella atypica
Butyricimonas synergistica
[Ruminococcus] gnavus
Acidaminococcus provencensis
Microbacterium maritypicum
Limosilactobacillus fermentum
Bacteroides clarus
Lactococcus garvieae
Streptococcus sanguinis
Lactococcus formosensis
[Clostridium] leptum
Limosilactobacillus vaginalis
Anaerobutyricum hallii
Streptococcus koreensis
Oliverpabstia intestinalis
Intestinibacter bartlettii
Ligilactobacillus salivarius
Bifidobacterium dentium
Faecalicoccus pleomorphus
Kluyvera ascorbata
Enterococcus diestrammenae
Lactobacillus crispatus
Parabacteroides goldsteinii
[Ruminococcus] lactaris
Mediterraneibacter massiliensis
Parabacteroides sp.
Citrobacter freundii
Clostridium sp.
Bacillus cereus
Lactiplantibacillus pentosus
Acinetobacter johnsonii
unclassified Muribaculaceae
Clostridioides difficile
Hungatella sp.
Arachnia sp.
Ruminococcus sp.
unclassified Shuttleworthia
Sellimonas intestinalis
Flavonifractor plautii
unclassified Atopobiaceae
Microbacterium algeriense
Clostridiales bacterium
[Clostridium] innocuum
Citrobacter sp.
Citrobacter youngae
Staphylococcus epidermidis
Cloacibacillus porcorum
Butyricimonas virosa
Bacillus mobilis
Bacteroides xylanisolvens
Akkermansia muciniphila
Bifidobacterium catenulatum
Rothia kristinae
Peptacetobacter hiranonis
Coprococcus comes
Bacteroides sp.
Baileyella intestinalis
Bacteroides faecis
Coprobacter secundus
Barnesiella intestinihominis
Faecalibacterium prausnitzii
Leuconostoc citreum
Ruminococcus bromii
Agathobaculum butyriciproducens
Clostridium beijerinckii
Collinsella tanakaei
Phocaeicola coprophilus
Megamonas funiformis
Blautia sp.
Coprococcus eutactus
Lacticaseibacillus sp.
Eubacterium ramulus
Faecalimonas umbilicata
Bacteroides stercoris
Bacteroides nordii
Peptoniphilus harei
Fusicatenibacter saccharivorans
Lactobacillus gasseri
Bacteroides intestinalis
Merdimonas faecis
Robinsoniella sp.
Dorea formicigenerans
Escherichia fergusonii
Kocuria marina
Lactococcus petauri
Blautia faecis
Mitsuokella sp.
Streptococcus gordonii
Mycobacteroides abscessus
Blautia obeum
Eisenbergiella porci
Streptococcus sp.
Christensenella intestinihominis
Enterococcus durans
Weissella cibaria
Parabacteroides distasonis
Staphylococcus hominis
Coprococcus sp.
Bifidobacterium animalis
Lachnoclostridium sp.
[Eubacterium] tenue
Erysipelotrichaceae bacterium
Lapidilactobacillus dextrinicus
Bacteroides uniformis
Enterobacter bugandensis
Hungatella effluvii
Streptococcus constellatus
Lacticaseibacillus rhamnosus
Kosakonia cowanii
Eisenbergiella sp.
Intestinimonas butyriciproducens
Klebsiella michiganensis
Blautia hansenii
Coriobacteriaceae bacterium
Eggerthella lenta
[Clostridium] symbiosum
Catenibacterium mitsuokai
Brachybacterium paraconglomeratum
Collinsella sp.
Enterocloster clostridioformis
Leuconostoc lactis
Paraclostridium bifermentans
Bacillus paranthracis
Holdemanella sp.
Longibaculum muris
Bacillus licheniformis
Massilioclostridium coli
Thomasclavelia ramosa
Acidaminococcus massiliensis
[Clostridium] scindens
Adlercreutzia equolifaciens
Leclercia adecarboxylata
Subdoligranulum sp.
Ruminococcus bicirculans (ex Wegman et al. 2014)
Micrococcus luteus
Lachnospira sp.
Enterocloster citroniae
Holdemanella porci
Megasphaera sp.
Varibaculum timonense
Roseburia hominis
Enterococcus malodoratus
Enterococcus raffinosus
Gabonibacter massiliensis
Enterobacter cloacae
Bacillus subtilis
Mediterraneibacter faecis
Lactobacillus paragasseri
unclassified Erysipelotrichaceae
Bacteroides caccae
Parabacteroides merdae
Tyzzerella sp.
Phocaeicola massiliensis
Veillonella sp.
Anaerostipes hadrus
Staphylococcus warneri
Anaerostipes sp.
Megasphaera micronuciformis
Limosilactobacillus oris
Collinsella aerofaciens
Enterobacter roggenkampii
Acinetobacter guillouiae
Coprococcus phoceensis
Lactobacillus johnsonii
Fusobacterium sp.
Bacteroides bouchesdurhonensis
Anaerococcus sp.
Mitsuokella jalaludinii
Bifidobacterium pseudolongum subsp. globosum
Vagococcus sp.
Butyricimonas paravirosa
Bacteroides ovatus
Coprobacillus cateniformis
Roseburia sp.
Parabacteroides johnsonii
Agathobacter rectalis
Bacteroides thetaiotaomicron
Streptococcus macedonicus
Bacillus sonorensis
Gordonia jacobaea
Enterococcus sp.
Clostridium tertium
unclassified Bacteroidaceae
Phocaeicola coprocola
Klebsiella pneumoniae
Dorea longicatena
Enterococcus lactis
描述信息 Here we present an expanded collection of the Culturable Genome Reference (CGR2), recapitulated 3,324 cultured genomes with high-quality draft, generated from the large-scale cultivation of over 20,000 bacteria isolates from fecal samples of healthy Chinese individuals. The resulting CGR2 classifies 527 species (222 novel species) from 8 phylum.
样品范围 Monoisolate
发布日期 2025-01-01
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
Shenzhen BGI Life Sciences Research Institute N/A
提交者 Yuanqiang Zou (zouyuanqiang@genomics.cn)
提交单位 Shenzhen BGI Life Sciences Research Institute
提交日期 2022-09-19

项目包含数据信息

资源名称 描述
BioSample (1804)  show -