项目编号 PRJCA012247
项目标题 Comparison of Phagocytic Function and mRNA Expression Profiles of Macrophages in Two Chinese Native Chicken Breeds
涉及领域 Agricultural
数据类型 Transcriptome or Gene expression
Raw sequence reads
物种名称 Gallus gallus
描述信息 Powerful phagocytosis by macrophages constitutes the first line of defense of the innate immune response. Macrophages are scavengers of cellular debris and invading pathogens. So far, differences in the phagocytic function of macrophages in different chicken breeds are rarely reported, and molecular mechanisms underlying phagocytosis remains poorly understood. In this study, comparison of differences in phagocytosis of primary macrophages and integrated analysis of mRNA expression profiles and whole-genome sequencing were conducted in Dagu chicken and Wenchang chicken. The results revealed Dagu chicken, compared to Wenchang chicken, was more resistant to salmonella challenge, particularly, displayed a significantly higher phagocytic ability at 14 and 28 days old, respectively. Furthermore, the comparative analysis of mRNA expression profiles of macrophages of two breeds in 28 days old revealed that 1136 differentially expressed genes (DEGs) were identified and 22 DEGs (e.g., H2AFZ, SNRPA1, CUEDC2, S100A12) were found to be hub genes regulating the phagocytosis by participating in different immunological biological signaling pathways. Besides, our results revealed many DEGs and hub genes were under strong selection between two breeds, and among strong selected genes, only H2AFZ gene was intersection of DEGs and hub genes. We provided comprehensive function comparison and transcriptomic profiles of macrophages in two Chinese native chicken breeds, and the identification of key genes will expand our understanding of the molecular mechanism of macrophage phagocytosis.
样品范围 Multispecies
发布日期 2023-11-20
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
36825012 Comparative functional analysis of macrophage phagocytosis in Dagu chickens and Wenchang chickens Frontiers in Immunology 10.3389/fimmu.2023.1064461 2023
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) General Program 32072708
National Key R&D Program of China National Key R&D Program of China 2018YFE0128000
China Agriculture Research System of MOF and MARA China Agriculture Research System of MOF and MARA CARS-41
Agricultural Science and Technology Innovation Program Agricultural Science and Technology Innovation Program ASTIP-IAS04
Agricultural Science and Technology Innovation Program Agricultural Science and Technology Innovation Program CAASZDRW202005
提交者 Zhang Jin (zhangjin0913@126.com)
提交单位 Institute of Animal Sciences, Chinese Academy of Agricultural Sciences
提交日期 2022-09-30

项目包含数据信息

资源名称 描述
BioSample (18)  show -
GSA (1) -
CRA008360 Transcriptome of macrophages in Dagu chicken and Wenchang chicken