Accession

PRJCA013096

Title

Systematic mining and genetic characterization of regulatory factors for wheat spike development

Relevance

Agricultural

Data types

Epigenomics
Transcriptome or Gene expression

Organisms

Triticum aestivum

Description

We characterized and dissected bread wheat spike into eight developmental stages, and used genome-wide gene expression and epigenetic profiling, to investigate the underlying regulatory mechanisms and mining key genes associated with spike morphology and development. The epigenetic profiling includes four types of histone modifications, a histone variant H2A.Z and chromatin accessibility.

Sample scope

Different tissues of single species

Release date

2024-04-01

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31921005
Chinese Academy of Sciences (CAS)		XDA24010204
National Key Research and Development Program of China		2021YFD1201500
Research Fund for Major Basic Research Program of Shandong Province		ZR2019ZD15

Submitter

Jun Xiao (jxiao@genetics.ac.cn)

Organization

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Submission date

2022-11-09

Project Data

Resource name	Description
BioSample (90) show	-
SAMC988982	RNA-seq of Triticum aestivum: spike at SR stage
SAMC988981	RNA-seq of Triticum aestivum: spike at SR stage
SAMC988980	RNA-seq of Triticum aestivum: spike at SR stage
SAMC988979	RNA-seq of Triticum aestivum: spike at SMI stage
SAMC988978	RNA-seq of Triticum aestivum: spike at SMI stage
SAMC988977	RNA-seq of Triticum aestivum: spike at SMI stage
SAMC988976	RNA-seq of Triticum aestivum: spike at SAM stage
SAMC988975	RNA-seq of Triticum aestivum: spike at SAM stage
SAMC988974	RNA-seq of Triticum aestivum: spike at SAM stage
SAMC988973	RNA-seq of Triticum aestivum: spike at GPD stage
SAMC988972	RNA-seq of Triticum aestivum: spike at GPD stage
SAMC988971	RNA-seq of Triticum aestivum: spike at GPD stage
SAMC988970	RNA-seq of Triticum aestivum: spike at FOP stage
SAMC988969	RNA-seq of Triticum aestivum: spike at FOP stage
SAMC988968	RNA-seq of Triticum aestivum: spike at FOP stage
SAMC988967	RNA-seq of Triticum aestivum: spike at FMI stage
SAMC988966	RNA-seq of Triticum aestivum: spike at FMI stage
SAMC988965	RNA-seq of Triticum aestivum: spike at FMI stage
SAMC988964	RNA-seq of Triticum aestivum: spike at EL stage
SAMC988963	RNA-seq of Triticum aestivum: spike at EL stage
SAMC988962	RNA-seq of Triticum aestivum: spike at EL stage
SAMC988961	RNA-seq of Triticum aestivum: spike at DR stage
SAMC988960	RNA-seq of Triticum aestivum: spike at DR stage
SAMC988959	RNA-seq of Triticum aestivum: spike at DR stage
SAMC988958	H3K4me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988957	H3K4me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988956	H3K4me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988955	H3K4me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988954	H3K4me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988953	H3K4me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988952	H3K4me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988951	H3K4me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988950	H3K4me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988949	H3K4me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988948	H3K36me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988947	H3K36me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988946	H3K36me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988945	H3K36me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988944	H3K36me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988943	H3K36me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988942	H3K36me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988941	H3K36me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988940	H3K36me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988939	H3K36me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988938	H3K27me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988937	H3K27me3 Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988936	H3K27me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988935	H3K27me3 Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988934	H3K27me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988933	H3K27me3 Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988932	H3K27me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988931	H3K27me3 Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988930	H3K27me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988929	H3K27me3 Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988928	H3K27ac Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988927	H3K27ac Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988926	H3K27ac Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988925	H3K27ac Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988924	H3K27ac Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988923	H3K27ac Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988922	H3K27ac Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988921	H3K27ac Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988920	H3K27ac Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988919	H3K27ac Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988918	H2A.Z Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988917	H2A.Z Cut&Tag of Triticum aestivum: spike at SMI stage
SAMC988916	H2A.Z Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988915	H2A.Z Cut&Tag of Triticum aestivum: spike at SAM stage
SAMC988914	H2A.Z Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988913	H2A.Z Cut&Tag of Triticum aestivum: spike at GPD stage
SAMC988912	H2A.Z Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988911	H2A.Z Cut&Tag of Triticum aestivum: spike at FOP stage
SAMC988910	H2A.Z Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988909	H2A.Z Cut&Tag of Triticum aestivum: spike at DR stage
SAMC988908	ATAC-seq of Triticum aestivum: spike at SR stage
SAMC988907	ATAC-seq of Triticum aestivum: spike at SR stage
SAMC988906	ATAC-seq of Triticum aestivum: spike at SMI stage
SAMC988905	ATAC-seq of Triticum aestivum: spike at SMI stage
SAMC988904	ATAC-seq of Triticum aestivum: spike at SAM stage
SAMC988903	ATAC-seq of Triticum aestivum: spike at SAM stage
SAMC988902	ATAC-seq of Triticum aestivum: spike at GPD stage
SAMC988901	ATAC-seq of Triticum aestivum: spike at GPD stage
SAMC988900	ATAC-seq of Triticum aestivum: spike at FOP stage
SAMC988899	ATAC-seq of Triticum aestivum: spike at FOP stage
SAMC988898	ATAC-seq of Triticum aestivum: spike at FMI stage
SAMC988897	ATAC-seq of Triticum aestivum: spike at FMI stage
SAMC988896	ATAC-seq of Triticum aestivum: spike at EL stage
SAMC988895	ATAC-seq of Triticum aestivum: spike at EL stage
SAMC988894	ATAC-seq of Triticum aestivum: spike at DR stage
SAMC988893	ATAC-seq of Triticum aestivum: spike at DR stage
GSA (1)	-
CRA008877	Systematic mining and genetic characterization of regulatory factors for wheat spike development