Accession

PRJCA014970

Title

The role of fiber in non-alcoholic steatohepatitis through modulating of gut microbiota

Relevance

Medical

Data types

Metagenome
Transcriptome or Gene expression
Metagenome sequencing

Organisms

Bacteria
Mus

Description

Male C57 mice was assigned into several groups, and received Normal chow diet (NCD), Choline deficient high fat diet (CDHFD), CDHFD + 10% Inulin (CDHFD-I), CDHFD + 10% Cellulose (CDHFD-C). Mice stool were collected and store in liquid nitrogen immediately. Metagenome sequencing or 16S rRNA high-throughput sequencing and RNA-seq sequencing were performed. Additionally, another mice experiment, mice received CDHFD or CDHFD + pentadecanoic acid for 4 months, mouse liver RNA-seq sequncing were performed.

Sample scope

Multispecies

Release date

2023-05-19

Publication

PubMed ID	Article title	Journal name	DOI	Year
37386075	Parabacteroides distasonis uses dietary inulin to suppress NASH via its metabolite pentadecanoic acid	Nature Microbiology	10.1038/s41564-023-01418-7	2023

Grants

Agency	program	Grant ID	Grant title
RGC Theme-based Research Scheme	RGC Theme-based Research Scheme (T12-703/19-R)	T12-703/19-R	RGC Theme-based Research Scheme

Submitter

Wenchao Wei (wenchaowei@link.cuhk.edu.hk)

Organization

Chinese University of Hong Kong

Submission date

2023-02-15

Project Data

Resource name	Description
BioSample (209) show	-
SAMC1094196	16S rRNA high-throughput sequencing of mice E26 stool_13C_Fraction14
SAMC1094195	16S rRNA high-throughput sequencing of mice E25 stool_13C_Fraction13
SAMC1094194	16S rRNA high-throughput sequencing of mice E24 stool_13C_Fraction12
SAMC1094193	16S rRNA high-throughput sequencing of mice E23 stool_13C_Fraction11
SAMC1094192	16S rRNA high-throughput sequencing of mice E22 stool_13C_Fraction10
SAMC1094191	16S rRNA high-throughput sequencing of mice E21 stool_13C_Fraction9
SAMC1094190	16S rRNA high-throughput sequencing of mice E20 stool_13C_Fraction8
SAMC1094189	16S rRNA high-throughput sequencing of mice E18 stool_13C_Fraction6
SAMC1094188	16S rRNA high-throughput sequencing of mice E17 stool_13C_Fraction5
SAMC1094187	16S rRNA high-throughput sequencing of mice E16 stool_13C_Fraction4
SAMC1094186	16S rRNA high-throughput sequencing of mice E15 stool_13C_Fraction3
SAMC1094185	16S rRNA high-throughput sequencing of mice E14 stool_13C_Fraction2
SAMC1094184	16S rRNA high-throughput sequencing of mice E13 stool_12C_Fraction14
SAMC1094183	16S rRNA high-throughput sequencing of mice E12 stool_12C_Fraction13
SAMC1094182	16S rRNA high-throughput sequencing of mice E11 stool_12C_Fraction12
SAMC1094181	16S rRNA high-throughput sequencing of mice E10 stool_12C_Fraction11
SAMC1094180	16S rRNA high-throughput sequencing of mice E9 stool_12C_Fraction10
SAMC1094179	16S rRNA high-throughput sequencing of mice E8 stool_12C_Fraction9
SAMC1094178	16S rRNA high-throughput sequencing of mice E7 stool_12C_Fraction8
SAMC1094177	16S rRNA high-throughput sequencing of mice E6 stool_12C_Fraction7
SAMC1094176	16S rRNA high-throughput sequencing of mice E5 stool_12C_Fraction6
SAMC1094175	16S rRNA high-throughput sequencing of mice E3 stool_12C_Fraction4
SAMC1094174	16S rRNA high-throughput sequencing of mice E1 stool_12C_Fraction2
SAMC1094173	16S rRNA high-throughput sequencing of mice D26 stool_13C_Fraction14
SAMC1094172	16S rRNA high-throughput sequencing of mice D25 stool_13C_Fraction13
SAMC1094171	16S rRNA high-throughput sequencing of mice D24 stool_13C_Fraction12
SAMC1094170	16S rRNA high-throughput sequencing of mice D23 stool_13C_Fraction11
SAMC1094169	16S rRNA high-throughput sequencing of mice D22 stool_13C_Fraction10
SAMC1094168	16S rRNA high-throughput sequencing of mice D21 stool_13C_Fraction9
SAMC1094167	16S rRNA high-throughput sequencing of mice D20 stool_13C_Fraction8
SAMC1094166	16S rRNA high-throughput sequencing of mice D19 stool_13C_Fraction7
SAMC1094165	16S rRNA high-throughput sequencing of mice D18 stool_13C_Fraction6
SAMC1094164	16S rRNA high-throughput sequencing of mice D17 stool_13C_Fraction5
SAMC1094163	16S rRNA high-throughput sequencing of mice D16 stool_13C_Fraction4
SAMC1094162	16S rRNA high-throughput sequencing of mice D15 stool_13C_Fraction3
SAMC1094161	16S rRNA high-throughput sequencing of mice D14 stool_13C_Fraction2
SAMC1094160	16S rRNA high-throughput sequencing of mice D13 stool_12C_Fraction14
SAMC1094159	16S rRNA high-throughput sequencing of mice D12 stool_12C_Fraction13
SAMC1094158	16S rRNA high-throughput sequencing of mice D11 stool_12C_Fraction12
SAMC1094157	16S rRNA high-throughput sequencing of mice D10 stool_12C_Fraction11
SAMC1094156	16S rRNA high-throughput sequencing of mice D9 stool_12C_Fraction10
SAMC1094155	16S rRNA high-throughput sequencing of mice D8 stool_12C_Fraction9
SAMC1094154	16S rRNA high-throughput sequencing of mice D7 stool_12C_Fraction8
SAMC1094153	16S rRNA high-throughput sequencing of mice D6 stool_12C_Fraction7
SAMC1094152	16S rRNA high-throughput sequencing of mice D5 stool_12C_Fraction6
SAMC1094151	16S rRNA high-throughput sequencing of mice D4 stool_12C_Fraction5
SAMC1094150	16S rRNA high-throughput sequencing of mice D3 stool_12C_Fraction4
SAMC1094149	16S rRNA high-throughput sequencing of mice D2 stool_12C_Fraction3
SAMC1094148	16S rRNA high-throughput sequencing of mice D1 stool_12C_Fraction2
SAMC1094147	16S rRNA high-throughput sequencing of mice C25 stool_13C_Fraction13
SAMC1094146	16S rRNA high-throughput sequencing of mice C24 stool_13C_Fraction12
SAMC1094145	16S rRNA high-throughput sequencing of mice C23 stool_13C_Fraction11
SAMC1094144	16S rRNA high-throughput sequencing of mice C22 stool_13C_Fraction10
SAMC1094143	16S rRNA high-throughput sequencing of mice C21 stool_13C_Fraction9
SAMC1094142	16S rRNA high-throughput sequencing of mice C20 stool_13C_Fraction8
SAMC1094141	16S rRNA high-throughput sequencing of mice C19 stool_13C_Fraction7
SAMC1094140	16S rRNA high-throughput sequencing of mice C18 stool_13C_Fraction6
SAMC1094139	16S rRNA high-throughput sequencing of mice C17 stool_13C_Fraction5
SAMC1094138	16S rRNA high-throughput sequencing of mice C16 stool_13C_Fraction4
SAMC1094137	16S rRNA high-throughput sequencing of mice C15 stool_13C_Fraction3
SAMC1094136	16S rRNA high-throughput sequencing of mice C13 stool_12C_Fraction14
SAMC1094135	16S rRNA high-throughput sequencing of mice C12 stool_12C_Fraction13
SAMC1094134	16S rRNA high-throughput sequencing of mice C10 stool_12C_Fraction11
SAMC1094133	16S rRNA high-throughput sequencing of mice C9 stool_12C_Fraction10
SAMC1094132	16S rRNA high-throughput sequencing of mice C8 stool_12C_Fraction9
SAMC1094131	16S rRNA high-throughput sequencing of mice C7 stool_12C_Fraction8
SAMC1094130	16S rRNA high-throughput sequencing of mice C6 stool_12C_Fraction7
SAMC1094129	16S rRNA high-throughput sequencing of mice C5 stool_12C_Fraction6
SAMC1094128	16S rRNA high-throughput sequencing of mice C4 stool_12C_Fraction5
SAMC1094127	16S rRNA high-throughput sequencing of mice C3 stool_12C_Fraction4
SAMC1094126	16S rRNA high-throughput sequencing of mice C1 stool_12C_Fraction2
SAMC1094125	16S rRNA high-throughput sequencing of mice B26 stool_13C_Fraction14
SAMC1094124	16S rRNA high-throughput sequencing of mice B24 stool_13C_Fraction12
SAMC1094123	16S rRNA high-throughput sequencing of mice B23 stool_13C_Fraction11
SAMC1094122	16S rRNA high-throughput sequencing of mice B22 stool_13C_Fraction10
SAMC1094121	16S rRNA high-throughput sequencing of mice B21 stool_13C_Fraction9
SAMC1094120	16S rRNA high-throughput sequencing of mice B20 stool_13C_Fraction8
SAMC1094119	16S rRNA high-throughput sequencing of mice B19 stool_13C_Fraction7
SAMC1094118	16S rRNA high-throughput sequencing of mice B18 stool_13C_Fraction6
SAMC1094117	16S rRNA high-throughput sequencing of mice B17 stool_13C_Fraction5
SAMC1094116	16S rRNA high-throughput sequencing of mice B16 stool_13C_Fraction4
SAMC1094115	16S rRNA high-throughput sequencing of mice B15 stool_13C_Fraction3
SAMC1094114	16S rRNA high-throughput sequencing of mice B14 stool_13C_Fraction2
SAMC1094113	16S rRNA high-throughput sequencing of mice B12 stool_12C_Fraction13
SAMC1094112	16S rRNA high-throughput sequencing of mice B11 stool_12C_Fraction12
SAMC1094111	16S rRNA high-throughput sequencing of mice B10 stool_12C_Fraction11
SAMC1094110	16S rRNA high-throughput sequencing of mice B9 stool_12C_Fraction10
SAMC1094109	16S rRNA high-throughput sequencing of mice B8 stool_12C_Fraction9
SAMC1094108	16S rRNA high-throughput sequencing of mice B7 stool_12C_Fraction8
SAMC1094107	16S rRNA high-throughput sequencing of mice B6 stool_12C_Fraction7
SAMC1094106	16S rRNA high-throughput sequencing of mice B5 stool_12C_Fraction6
SAMC1094105	16S rRNA high-throughput sequencing of mice B4 stool_12C_Fraction5
SAMC1094104	16S rRNA high-throughput sequencing of mice B3 stool_12C_Fraction4
SAMC1094103	16S rRNA high-throughput sequencing of mice B2 stool_12C_Fraction3
SAMC1094102	16S rRNA high-throughput sequencing of mice A26 stool_13C_Fraction14
SAMC1094101	16S rRNA high-throughput sequencing of mice A25 stool_13C_Fraction13
SAMC1094100	16S rRNA high-throughput sequencing of mice A24 stool_13C_Fraction12
SAMC1094099	16S rRNA high-throughput sequencing of mice A23 stool_13C_Fraction11
SAMC1094098	16S rRNA high-throughput sequencing of mice A22 stool_13C_Fraction10
SAMC1094097	16S rRNA high-throughput sequencing of mice A21 stool_13C_Fraction9
SAMC1094096	16S rRNA high-throughput sequencing of mice A20 stool_13C_Fraction8
SAMC1094095	16S rRNA high-throughput sequencing of mice A19 stool_13C_Fraction7
SAMC1094094	16S rRNA high-throughput sequencing of mice A18 stool_13C_Fraction6
SAMC1094093	16S rRNA high-throughput sequencing of mice A17 stool_13C_Fraction5
SAMC1094092	16S rRNA high-throughput sequencing of mice A16 stool_13C_Fraction4
SAMC1094091	16S rRNA high-throughput sequencing of mice A14 stool_13C_Fraction2
SAMC1094090	16S rRNA high-throughput sequencing of mice A13 stool_12C_Fraction14
SAMC1094089	16S rRNA high-throughput sequencing of mice A12 stool_12C_Fraction13
SAMC1094088	16S rRNA high-throughput sequencing of mice A11 stool_12C_Fraction12
SAMC1094087	16S rRNA high-throughput sequencing of mice A10 stool_12C_Fraction11
SAMC1094086	16S rRNA high-throughput sequencing of mice A9 stool_12C_Fraction10
SAMC1094085	16S rRNA high-throughput sequencing of mice A8 stool_12C_Fraction9
SAMC1094084	16S rRNA high-throughput sequencing of mice A7 stool_12C_Fraction8
SAMC1094083	16S rRNA high-throughput sequencing of mice A6 stool_12C_Fraction7
SAMC1094082	16S rRNA high-throughput sequencing of mice A5 stool_12C_Fraction6
SAMC1094081	16S rRNA high-throughput sequencing of mice A4 stool_12C_Fraction5
SAMC1094080	16S rRNA high-throughput sequencing of mice A3 stool_12C_Fraction4
SAMC1094079	16S rRNA high-throughput sequencing of mice A2 stool_12C_Fraction3
SAMC1094078	16S rRNA high-throughput sequencing of mice A1 stool_12C_Fraction2
SAMC1093020	16S rRNA high-throughput sequencing of mice M19 stool
SAMC1093019	16S rRNA high-throughput sequencing of mice M18 stool
SAMC1093018	16S rRNA high-throughput sequencing of mice M17 stool
SAMC1093017	16S rRNA high-throughput sequencing of mice M16 stool
SAMC1093016	16S rRNA high-throughput sequencing of mice M15 stool
SAMC1093015	16S rRNA high-throughput sequencing of mice M14 stool
SAMC1093014	16S rRNA high-throughput sequencing of mice M13 stool
SAMC1093013	16S rRNA high-throughput sequencing of mice M12 stool
SAMC1093012	16S rRNA high-throughput sequencing of mice M11 stool
SAMC1093011	16S rRNA high-throughput sequencing of mice M10 stool
SAMC1093010	16S rRNA high-throughput sequencing of mice M9 stool
SAMC1093009	16S rRNA high-throughput sequencing of mice M8 stool
SAMC1093008	16S rRNA high-throughput sequencing of mice M7 stool
SAMC1093007	16S rRNA high-throughput sequencing of mice M6 stool
SAMC1093006	16S rRNA high-throughput sequencing of mice M5 stool
SAMC1093005	16S rRNA high-throughput sequencing of mice M4 stool
SAMC1093004	16S rRNA high-throughput sequencing of mice M3 stool
SAMC1093003	16S rRNA high-throughput sequencing of mice M2 stool
SAMC1093002	16S rRNA high-throughput sequencing of mice M1 stool
SAMC1093001	Metagenome sequencing of mice M30_2 stool with CDHFD-13C-I
SAMC1093000	Metagenome sequencing of mice M29_2 stool with CDHFD-13C-I
SAMC1092999	Metagenome sequencing of mice M28_2 stool with CDHFD-13C-I
SAMC1092998	Metagenome sequencing of mice M27_2 stool with CDHFD-13C-I
SAMC1092997	Metagenome sequencing of mice M24_2 stool with CDHFD-12C-I
SAMC1092996	Metagenome sequencing of mice M23_2 stool with CDHFD-12C-I
SAMC1092995	Metagenome sequencing of mice M22_2 stool with CDHFD-12C-I
SAMC1092994	Metagenome sequencing of mice M21_2 stool with CDHFD-12C-I
SAMC1092993	Metagenome sequencing of mice M20_2 stool with CDHFD-C
SAMC1092992	Metagenome sequencing of mice M18_2 stool with CDHFD-C
SAMC1092991	Metagenome sequencing of mice M15_2 stool with CDHFD-I
SAMC1092990	Metagenome sequencing of mice M13_2 stool with CDHFD-I
SAMC1092989	Metagenome sequencing of mice M11_2 stool with CDHFD-I
SAMC1092988	Metagenome sequencing of mice M9_2 stool with CDHFD
SAMC1092987	Metagenome sequencing of mice M8_2 stool with CDHFD
SAMC1092986	Metagenome sequencing of mice M7_2 stool with CDHFD
SAMC1092985	Metagenome sequencing of mice M5_2 stool with NCD
SAMC1092984	Metagenome sequencing of mice M3_2 stool with NCD
SAMC1092983	Metagenome sequencing of mice M1_2 stool with NCD
SAMC1092982	Metagenome sequencing of mice M30 stool with CDHFD-13C-I
SAMC1092981	Metagenome sequencing of mice M29 stool with CDHFD-13C-I
SAMC1092980	Metagenome sequencing of mice M28 stool with CDHFD-13C-I
SAMC1092979	Metagenome sequencing of mice M27 stool with CDHFD-13C-I
SAMC1092978	Metagenome sequencing of mice M26 stool with CDHFD-13C-I
SAMC1092977	Metagenome sequencing of mice M25 stool with CDHFD-12C-I
SAMC1092976	Metagenome sequencing of mice M24 stool with CDHFD-12C-I
SAMC1092975	Metagenome sequencing of mice M23 stool with CDHFD-12C-I
SAMC1092974	Metagenome sequencing of mice M22 stool with CDHFD-12C-I
SAMC1092973	Metagenome sequencing of mice M21 stool with CDHFD-12C-I
SAMC1092972	Metagenome sequencing of mice M20 stool with CDHFD-C
SAMC1092971	Metagenome sequencing of mice M19 stool with CDHFD-C
SAMC1092970	Metagenome sequencing of mice M18 stool with CDHFD-C
SAMC1092969	Metagenome sequencing of mice M16 stool with CDHFD-C
SAMC1092968	Metagenome sequencing of mice M15 stool with CDHFD-I
SAMC1092967	Metagenome sequencing of mice M14 stool with CDHFD-I
SAMC1092966	Metagenome sequencing of mice M13 stool with CDHFD-I
SAMC1092965	Metagenome sequencing of mice M12 stool with CDHFD-I
SAMC1092964	Metagenome sequencing of mice M10 stool with CDHFD
SAMC1092963	Metagenome sequencing of mice M9 stool with CDHFD
SAMC1092962	Metagenome sequencing of mice M8 stool with CDHFD
SAMC1092961	Metagenome sequencing of mice M7 stool with CDHFD
SAMC1092960	Metagenome sequencing of mice M5 stool with NCD
SAMC1092959	Metagenome sequencing of mice M4 stool with NCD
SAMC1092958	Metagenome sequencing of mice M3 stool with NCD
SAMC1092957	Metagenome sequencing of mice M2 stool with NCD
SAMC1092840	RNA-seq sequencing of mice w15 liver with CDHFD+pentadecanoic acid
SAMC1092839	RNA-seq sequencing of mice w14 liver with CDHFD+pentadecanoic acid
SAMC1092838	RNA-seq sequencing of mice w13 liver with CDHFD+pentadecanoic acid
SAMC1092837	RNA-seq sequencing of mice w12 liver with CDHFD+pentadecanoic acid
SAMC1092836	RNA-seq sequencing of mice w11 liver with CDHFD+pentadecanoic acid
SAMC1092835	RNA-seq sequencing of mice w10 liver with CDHFD
SAMC1092834	RNA-seq sequencing of mice w9 liver with CDHFD
SAMC1092833	RNA-seq sequencing of mice w8 liver with CDHFD
SAMC1092832	RNA-seq sequencing of mice w7 liver with CDHFD
SAMC1092831	RNA-seq sequencing of mice w6 liver with CDHFD
SAMC1092830	RNA-seq sequencing of mice s1246 liver with CDHFD
SAMC1092829	RNA-seq sequencing of mice s1242 liver with CDHFD
SAMC1092828	RNA-seq sequencing of mice s1240 liver with CDHFD
SAMC1092827	RNA-seq sequencing of mice s1235 liver with CDHFD
SAMC1092826	RNA-seq sequencing of mice s1230 liver with CDHFD-I
SAMC1092825	RNA-seq sequencing of mice s1229 liver with CDHFD-I
SAMC1092824	RNA-seq sequencing of mice s1228 liver with CDHFD-I
SAMC1092823	RNA-seq sequencing of mice s1227 liver with CDHFD-I
SAMC1092422	16S rRNA high-throughput sequencing of mice M2 stool
SAMC1092421	16S rRNA high-throughput sequencing of mice M1 stool
SAMC1092398	RNA-seq sequencing of mice liver: CDHFD
SAMC1092397	RNA-seq sequencing of mice liver: CDHFD-I
SAMC1092391	Metagenome sequencing of stool:CDHFD-C
SAMC1092390	Metagenome sequencing of stool:CDHFD-I
SAMC1092389	Metagenome sequencing of stool:CDHFD
SAMC1092388	Metagenome sequencing of stool: NCD
GSA (3)	-
CRA009819	The role of dietary fiber in Non-acoholic steatohepatitis progression
CRA009820	The role of dietary inulin and its associated metabolites pentadecanoic acid in Non-acoholic steatohepatitis progression (RNA-seq data)
CRA009823	The role of dietary fiber and its associated bacteria in Non-acoholic steatohepatitis progression